Showing : cdf • reset
0
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1
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990
views
[R] Make.cdf.package error
cdf cdf
updated 14.7 years ago by ▴ 10 • written 14.7 years ago by 68k
0
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7
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2.1k
views
converting Affy indices to x,y coordinates
cdf probe convert cdf probe convert
updated 14.7 years ago by ▴ 30 • written 14.7 years ago by ▴ 20
0
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6
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1.1k
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 14.7 years ago by ★ 11k • written 14.7 years ago by ★ 13k
0
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1
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1.1k
views
How to make a probe package with the GPL1073.probe file from GEO.
cdf probe affy convert AnnotationDbi cdf probe affy convert AnnotationDbi
updated 14.7 years ago by ★ 4.1k • written 14.7 years ago by ▴ 10
0
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4
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1.8k
views
mirna102Xgaincdf package
miRNA Microarray cdf miRNA Microarray cdf
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 50
0
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1
reply
1.4k
views
cdf.file for Affymetrix Rat Gene 1.1 ST Array Plate
Microarray Normalization cdf probe Microarray Normalization cdf probe
updated 14.8 years ago by ★ 4.1k • written 14.8 years ago by ▴ 10
0
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1
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1.3k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation GO cdf probe affy convert ASSIGN Annotation GO cdf probe affy convert
updated 14.8 years ago by ▴ 90 • written 14.8 years ago by 68k
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1
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1.1k
views
Problems of CDF environment while doing RMA
Microarray cdf Microarray cdf
updated 14.9 years ago by ★ 13k • written 14.8 years ago by ▴ 10
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0
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1.8k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
14.9 years ago Roman ▴ 20
0
votes
3
replies
1.2k
views
Problems using pdInfoBuilder to create an Affymetrix Mouse Diversity annotation package
Annotation cdf Annotation cdf
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 30
0
votes
1
reply
957
views
unable to install mogene10stv1cdf
cdf cdf
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 20
0
votes
4
replies
1.9k
views
affy package and ST arrays
Normalization cdf Normalization cdf
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 320
0
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0
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1.0k
views
unable to install the package mogene10stv1cdf
cdf cdf
14.9 years ago Ming Zheng ▴ 20
0
votes
1
reply
992
views
Problems creating CDF environment for Affymetrix SNP Array
SNP cdf SNP cdf
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 30
0
votes
1
reply
867
views
Combining Affymetrix miRNA samples from different arrays
Normalization cdf Normalization cdf
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 320
0
votes
2
replies
2.0k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.9 years ago by ▴ 120 • written 14.9 years ago by ▴ 10
0
votes
2
replies
2.1k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 120
0
votes
4
replies
2.1k
views
miRNA Array from Affymetrix
miRNA Microarray cdf miRNA Microarray cdf
updated 14.9 years ago by ★ 4.1k • written 14.9 years ago by ▴ 40
0
votes
0
replies
1.5k
views
Illumina CanineHD CNV & crlmm?
GO HapMap cdf affy crlmm GO HapMap cdf affy crlmm
14.9 years ago Matthew Ritchie ▴ 1000
0
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2
replies
2.6k
views
problem installing 'GLAD' package
cdf GLAD cdf GLAD
14.9 years ago Shenglin Zheng ▴ 20
0
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1
reply
2.1k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 20
0
votes
6
replies
2.8k
views
CDF file for Mouse Gene 1.1 ST Array
cdf cdf
updated 14.9 years ago by ▴ 80 • written 14.9 years ago by ▴ 330
0
votes
0
replies
1.3k
views
Illumina CanineHD CNV & crlmm?
GO cdf affy crlmm GO cdf affy crlmm
14.9 years ago Dykema, Karl ▴ 90
0
votes
1
reply
990
views
RMA: Affy MoEx and background correction
cdf affy cdf affy
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 70
0
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0
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1.2k
views
QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
cdf cdf
15.0 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.4k
views
drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
15.0 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
970
views
miRNA normalization using affy package?
miRNA Normalization cdf affy miRNA Normalization cdf affy
updated 15.0 years ago by ★ 4.1k • written 15.0 years ago by ▴ 320
0
votes
2
replies
1.2k
views
"import.expr.scheme" error in Package "xps"
Annotation cdf probe xps Annotation cdf probe xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 20
0
votes
2
replies
912
views
Affy: reading several types of affymetrix arrays at once
cdf affy cdf affy
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 10
0
votes
2
replies
1.6k
views
Problem importing ArrayExpress data for custom array into BioConductor
Microarray cdf ArrayExpress Microarray cdf ArrayExpress
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 10
0
votes
3
replies
1.3k
views
gene-locations
cdf cdf
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 100
0
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0
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1.4k
views
Bioconductor
cdf affy affyPara cdf affy affyPara
15.0 years ago Valerie Obenchain ★ 6.8k
0
votes
2
replies
2.3k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 110
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0
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1.5k
views
Job Posting: Scientific Programmer
Sequencing Cancer cdf Sequencing Cancer cdf
15.0 years ago Greg Finak ▴ 240
0
votes
4
replies
2.6k
views
affyPara
cdf affy affyPara cdf affy affyPara
15.1 years ago • updated 15.0 years ago danieladna ▴ 110
0
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6
replies
2.2k
views
Puma question
cdf GEOquery puma cdf GEOquery puma
15.1 years ago Manca Marco PATH ▴ 340
0
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1
reply
1.2k
views
affypara
cdf affy affyPara cdf affy affyPara
updated 15.1 years ago by ★ 6.8k • written 15.1 years ago by ▴ 110
0
votes
5
replies
1.5k
views
Package "xps" "import.expr.scheme" problem
Annotation cdf probe Annotation cdf probe
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
0
votes
10
replies
1.9k
views
QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
cdf affy cdf affy
15.1 years ago Harry Mangalam ▴ 70
0
votes
6
replies
1.9k
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
15.2 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
877
views
question regarding removing probes/probe sets before normalization
Normalization cdf probe Normalization cdf probe
15.2 years ago Jack Luo ▴ 450
0
votes
0
replies
611
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
15.2 years ago Jenny Drnevich ★ 2.0k
0
votes
7
replies
1.4k
views
question regarding MAS5 normalization with reduced probes
cdf cdf
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 820
0
votes
1
reply
1.5k
views
biomaRt Error : Affy Human Exon array annotation
cdf annotate convert biomaRt cdf annotate convert biomaRt
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 260
0
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0
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570
views
download error with some packages(windows)
cdf cdf
15.3 years ago Arcor ▴ 10
0
votes
8
replies
1.8k
views
Affymetrix HG U295 support in BioC?
cdf affy xps cdf affy xps
15.3 years ago Sole Acha, Xavi ▴ 110
0
votes
0
replies
836
views
xps - creating ROOT scheme fi les
Annotation Preprocessing cdf PROcess oligo xps Annotation Preprocessing cdf PROcess xps
15.4 years ago Benilton Carvalho ★ 4.3k
0
votes
6
replies
1.8k
views
xps - creating ROOT scheme fi les
Annotation cdf xps Annotation cdf xps
updated 15.4 years ago by ★ 3.9k • written 15.4 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Two Bioconductor Job Opportunities in Seattle
Microarray Annotation Cancer cdf Microarray Annotation Cancer cdf
15.4 years ago Martin Morgan 25k
0
votes
0
replies
816
views
mogene10stv1 annotation problem
Annotation GO cdf probe Annotation GO cdf probe
15.4 years ago James W. MacDonald 68k
927 results • Page 5 of 19
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Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table by Francesc • 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
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Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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