Showing : cdf • reset
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question about CDF file
mouse4302 cdf mouse4302 cdf
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
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1.3k
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Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
cdf cdf
15.4 years ago Ivanek, Robert ▴ 100
0
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2
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1.4k
views
problem with xps and annotation file from affymetrix mirna array
miRNA Annotation cdf probe xps miRNA Annotation cdf probe xps
updated 15.4 years ago by ★ 3.9k • written 15.4 years ago by ▴ 40
0
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2
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1.1k
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question about qc function in SimpleAffy package with U95Av2 array
cdf cdf
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 820
0
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1
reply
631
views
(no subject)
cdf cdf
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 50
0
votes
1
reply
1.2k
views
Unique CDF File
cdf affylmGUI cdf affylmGUI
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ▴ 10
0
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10
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2.6k
views
package pair "hugene10stv1cdf"/"hugene10stprobeset.db"
Annotation cdf Annotation cdf
updated 15.5 years ago by 68k • written 15.5 years ago by ★ 2.3k
0
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6
replies
1.4k
views
CDF for Cytogenetics_Array
cdf affy cdf affy
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 40
0
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12
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2.9k
views
Bioconductor - hugene10stv1cdf not available
cdf cdf
15.5 years ago Christoph Knapp ▴ 70
0
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0
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1.3k
views
hugene10stv1cdf
Preprocessing cdf Preprocessing cdf
15.5 years ago Anthony Bosco ▴ 500
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1
reply
1.3k
views
hugene10stv1cdf
cdf cdf
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 70
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0
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1.1k
views
Bioconductor Digest, Vol 86, Issue 19
cdf affy oligo cdf affy oligo
15.5 years ago Sherri Christian ▴ 20
0
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1
reply
1.1k
views
Error in setQCEnvironment(cdfn)-reg
Microarray cdf Microarray cdf
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 20
0
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1
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2.5k
views
CDF environment missing for HuGene-1_0-st-v1
cdf cdf
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 20
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2
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1.2k
views
how to find the probe set ID using different CDF file?
cdf probe affy cdf probe affy
updated 15.6 years ago by ▴ 630 • written 15.6 years ago by ▴ 820
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votes
1
reply
810
views
Query
cdf probe cdf probe
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 220
0
votes
1
reply
1.1k
views
Specifying a local CDF file for use with fitPLM or others
cdf cdf
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 40
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0
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1.2k
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question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.6 years ago Groot, Philip de ▴ 630
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1
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783
views
Fwd: regarding installaion of cdf package
cdf cdf
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 220
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0
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2.0k
views
Error in getCdfInfo(object)
cdf simpleaffy cdf simpleaffy
15.6 years ago Arun A K ▴ 20
0
votes
1
reply
785
views
removing probes from affybatch error
cdf probe affy cdf probe affy
updated 15.6 years ago by 68k • written 15.6 years ago by ★ 2.0k
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0
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1.2k
views
question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.6 years ago James Anderson ▴ 820
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1
reply
4.9k
views
Error in getCdfInfo(object)
cdf cdf
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 20
0
votes
0
replies
991
views
Fwd: regarding installaion of cdf package
cdf cdf
15.6 years ago Groot, Philip de ▴ 630
0
votes
1
reply
960
views
regarding installaion of cdf package
cdf cdf
15.6 years ago sneha patil ▴ 220
0
votes
2
replies
887
views
Tools for comparing microarray data on a snp level
SNP cdf SNP cdf
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 40
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0
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847
views
affymetrix gene level arrays - cdf issue
cdf xps cdf xps
15.6 years ago Stefanie Tauber ▴ 40
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10
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3.5k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Normalization cdf oligo DTA Microarray Normalization cdf oligo DTA
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 110
0
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2
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1.6k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Annotation Normalization Preprocessing cdf probe affy affyPLM oligo Microarray
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ★ 4.3k
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2
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1.7k
views
Affxparser: warning creating cel file from AffyBatch
cdf affy affxparser cdf affy affxparser
15.7 years ago Guido Hooiveld ★ 4.1k
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6
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1.8k
views
Problem with MAS5 calls on MoEx array
cdf affy cdf affy
updated 15.7 years ago by ★ 3.9k • written 15.7 years ago by ▴ 70
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4
replies
2.1k
views
Getting probes id for particular probeset id
cdf cdf
15.7 years ago marek piatek BI ▴ 90
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0
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921
views
Rcode for removing probes
Normalization cdf probe affy Normalization cdf probe affy
15.7 years ago Jenny Drnevich ★ 2.0k
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1
reply
1.0k
views
FW: Problem in masking individual probes to calculate expression values
cdf probe gcrma cdf probe gcrma
updated 15.7 years ago by ▴ 50 • written 15.7 years ago by ★ 2.0k
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0
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755
views
regarding GCRMA normalization
cdf probe cdf probe
15.8 years ago James W. MacDonald 68k
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0
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783
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Regardin GCRMA normalization
cdf probe cdf probe
15.8 years ago James W. MacDonald 68k
0
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4
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1.4k
views
regarding GCRMA normalization
cdf probe cdf probe
15.8 years ago sneha patil ▴ 220
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0
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1.1k
views
Regardin GCRMA normalization
cdf probe cdf probe
15.8 years ago sneha patil ▴ 220
0
votes
1
reply
1.3k
views
generate a CDF file from Affymetrix ST array 1.1 library
cdf probe PROcess cdf probe PROcess
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 160
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1
reply
972
views
Regarding GCRMA normalisation
cdf cdf
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 220
0
votes
0
replies
761
views
removing probes from affybatch error
cdf probe cdf probe
15.8 years ago Jenny Drnevich ★ 2.0k
0
votes
3
replies
1.9k
views
arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 15.8 years ago by ▴ 630 • written 15.8 years ago by ▴ 160
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0
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1.1k
views
Problems with Affylimma and AffylmGUI
cdf affylmGUI cdf affylmGUI
15.8 years ago Maxim ▴ 170
0
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2
replies
1.1k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf Cancer cdf
updated 15.8 years ago by ▴ 950 • written 15.8 years ago by 25k
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0
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1.4k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.8 years ago James W. MacDonald 68k
0
votes
1
reply
1.1k
views
make.cdf.package: Error: cannot allocate vector of size 1 Kb
cdf cdf
updated 15.8 years ago by ★ 13k • written 15.9 years ago by ▴ 950
0
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5
replies
2.5k
views
Affymetrix HT HG-U133+ PM Array Plate annotation data
Annotation cdf probe Annotation cdf probe
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 40
0
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0
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1.3k
views
.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
15.9 years ago Leonor Palmeira ▴ 100
0
votes
4
replies
1.4k
views
trouble with cdf, .qcdef file
cdf cdf
updated 15.9 years ago by 1.6k • written 15.9 years ago by ▴ 40
0
votes
2
replies
1.5k
views
Fixing brainarray repository link for mac os x
Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 80
927 results • Page 6 of 19
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Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
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Comment: deseq2 filter the low counts
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Answer: Important: Bioconductor Release 3.22 Delayed
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