Showing : cdf • reset
0
votes
2
replies
1.6k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ▴ 20
0
votes
0
replies
1.3k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
16.6 years ago James W. MacDonald 68k
0
votes
1
reply
1.4k
views
cdf and probe for HT HG-U133+ PM Array Plate
cdf probe cdf probe
updated 16.6 years ago by ★ 3.9k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1000
views
Please add hugene10stv1.cdf
cdf limma affylmGUI cdf limma affylmGUI
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 10
0
votes
7
replies
2.5k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 16.7 years ago by ▴ 630 • written 16.7 years ago by ▴ 370
0
votes
0
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904
views
How to generate the CDF files for Arabidopsis Tiling Arrays
Microarray GO cdf Microarray GO cdf
16.7 years ago Wolfgang Huber ★ 13k
0
votes
3
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1.6k
views
annotating genes using KEGG
hgu133a cdf hgu133a cdf
16.7 years ago dhaarini s ▴ 70
0
votes
3
replies
1.7k
views
How to generate the CDF files for Arabidopsis Tiling Arrays
cdf cdf
updated 16.7 years ago by ★ 13k • written 16.7 years ago by ▴ 30
1
vote
0
replies
1.1k
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
16.7 years ago Nishant Gopalakrishnan ▴ 340
0
votes
3
replies
1.3k
views
Choosing the transcripts for dataanalysis from GeneChip
GO cdf GO cdf
updated 16.7 years ago by ▴ 250 • written 16.7 years ago by ▴ 130
0
votes
2
replies
1.2k
views
Cannot find MoGene-1.0
cdf affy cdf affy
updated 16.7 years ago by ▴ 200 • written 16.7 years ago by ▴ 300
0
votes
0
replies
676
views
ragene10st
GO cdf GO cdf
16.7 years ago Manhong Dai ▴ 200
0
votes
0
replies
1.0k
views
MBNI Custom CDF Announcement
cdf probe Vega cdf probe Vega
16.7 years ago Manhong Dai ▴ 200
0
votes
5
replies
1.1k
views
Running time for make.cdf.package
cdf cdf
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 30
0
votes
0
replies
1.3k
views
Creating Affymetrix CDF files
cdf affxparser cdf affxparser
16.7 years ago Henrik Bengtsson ★ 2.4k
0
votes
0
replies
805
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Select an affybatch subset prior to normalization
Normalization cdf Normalization cdf
16.7 years ago Javier Pérez Florido ▴ 840
0
votes
1
reply
1.8k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.7 years ago by ▴ 30 • written 16.7 years ago by ▴ 170
0
votes
0
replies
1.0k
views
SimpeAffy: how to get/generate qcdef file?
cdf simpleaffy cdf simpleaffy
16.7 years ago Renaud Gaujoux ▴ 170
0
votes
0
replies
992
views
[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302 cdf mouse4302 cdf
16.7 years ago Naira Naouar ▴ 40
0
votes
1
reply
1.4k
views
fail combineAffyBatch for many files
cdf matchprobes cdf matchprobes
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ▴ 30
0
votes
3
replies
2.0k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
16.8 years ago Anne-Marie Madore ▴ 30
0
votes
1
reply
1.3k
views
Select an affybatch subset prior to normalization
Normalization cdf PROcess Normalization cdf PROcess
updated 16.8 years ago by ★ 2.0k • written 16.8 years ago by ▴ 840
0
votes
4
replies
1.9k
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use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 16.8 years ago by ▴ 70 • written 16.8 years ago by ▴ 190
0
votes
2
replies
1.7k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 70
0
votes
5
replies
2.0k
views
biomaRt and Ensembl probe set filter....
cdf probe affy graph limma biomaRt cdf probe affy graph limma biomaRt
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 110
0
votes
1
reply
1.7k
views
Creating Affymetrix CDF files
Annotation cdf probe Annotation cdf probe
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 600
0
votes
2
replies
1.4k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 20
0
votes
8
replies
2.0k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ▴ 70
0
votes
0
replies
1.2k
views
Fwd: RMA error in cdf environment with removed probes (Yeast2)
Yeast yeast2 cdf probe Yeast yeast2 cdf probe
16.8 years ago Omri Yahel ▴ 70
0
votes
2
replies
1.3k
views
onvert an already existing CDF environment into a CDF file or CDF package
cdf convert cdf convert
updated 16.9 years ago by ▴ 330 • written 16.9 years ago by ★ 1.0k
0
votes
1
reply
971
views
use alternative CDF in aroma.affymetrix in linux
cdf cdf
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ★ 1.0k
0
votes
2
replies
1.8k
views
Processing exon array in bioconductor
cdf cdf
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 10
0
votes
9
replies
2.5k
views
combineAffyBatch problem
cdf cdf
16.9 years ago Rifat A Hamoudi ▴ 50
0
votes
9
replies
2.2k
views
analyze HuEx array using HuGene .cdf file
cdf cdf
updated 16.9 years ago by ★ 2.4k • written 16.9 years ago by ★ 1.0k
0
votes
2
replies
1.3k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 60
0
votes
4
replies
1.9k
views
Mouse Gene ST v1 CDF Issues (MoGene10stv1): Failure of affyPLM and pdfInfoBuilder
Annotation cdf probe affy affyPLM Annotation cdf probe affy affyPLM
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 130
0
votes
2
replies
2.0k
views
Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.9 years ago by ▴ 140 • written 16.9 years ago by 68k
0
votes
0
replies
847
views
Custom CDF files
Annotation GO cdf affy PROcess Annotation GO cdf affy PROcess
16.9 years ago Edward Oakeley ▴ 20
0
votes
2
replies
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf plier cdf plier
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 140
0
votes
1
reply
1.1k
views
human exon array 1.0ST, exonmap, exon.pmcdf troubles
cdf affy cdf affy
16.9 years ago Tobias Straub ▴ 430
0
votes
1
reply
1.4k
views
memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf db0 cdf db0
updated 17.0 years ago by ★ 13k • written 17.0 years ago by ▴ 10
0
votes
4
replies
1.9k
views
CDF issue
Annotation Cancer cdf annotate affy Annotation Cancer cdf annotate affy
17.0 years ago Mathe, Ewy NIH/NCI [F] ▴ 40
0
votes
1
reply
856
views
Can't load the arabidopsis.db annotation package created in AnnotationDbi
cdf cdf
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 630
0
votes
2
replies
1.7k
views
Error in getCdfInfo(object) when using QCReport
cdf cdf
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 40
0
votes
5
replies
2.0k
views
newbie problems with AnnBuilder
Annotation Organism cdf probe affy AnnBuilder Annotation Organism cdf probe affy
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 830
0
votes
3
replies
1.7k
views
help with using Category package with makecdfenv built Gene ST package
GO cdf affy limma Category GO cdf affy limma Category
updated 17.0 years ago by ★ 5.5k • written 17.0 years ago by ▴ 830
0
votes
2
replies
1.0k
views
can can affyQAReport (package affyQCReport) be adapted for use with Affy Gene ST arrays that are not incorporated into an affyBatch?
cdf convert cdf convert
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 830
0
votes
1
reply
1.2k
views
error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 17.1 years ago by 68k • written 17.1 years ago by ▴ 830
0
votes
4
replies
2.5k
views
topGO problem
GO cdf affy topGO GO cdf affy topGO
17.1 years ago Iain Gallagher ▴ 930
927 results • Page 8 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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