Showing : cdf • reset
0
votes
0
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1.0k
views
Removing probes from AffyBatch
cdf probe Biostrings cdf probe Biostrings
17.1 years ago lgautier@altern.org ▴ 950
0
votes
8
replies
2.2k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 17.1 years ago by ★ 2.0k • written 17.1 years ago by ▴ 160
0
votes
0
replies
926
views
Pd info package affy 10K array
Microarray Annotation Cancer cdf probe affy Microarray Annotation Cancer cdf probe affy
17.1 years ago Henrik Bengtsson ★ 2.4k
0
votes
0
replies
883
views
mu11ksuba + gcrma = error
mu11ksuba cdf gcrma mu11ksuba cdf gcrma
17.1 years ago Ido M. Tamir ▴ 150
0
votes
0
replies
1.5k
views
Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.2 years ago Ludo Muller ▴ 50
0
votes
3
replies
1.3k
views
Missing ProbeSets in Affymetrix MoGene 1.0 ST chips
Annotation cdf GeneSpring Annotation cdf GeneSpring
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 910
0
votes
2
replies
1.3k
views
exonmap question: rma (& plier ) crashes conti.
Annotation cdf Annotation cdf
17.2 years ago Tae-Hoon Chung ▴ 70
0
votes
6
replies
1.8k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 50
0
votes
3
replies
1.3k
views
General question about library files
cdf affy cdf affy
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 60
0
votes
1
reply
1.5k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
0
votes
1
reply
1.1k
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 40
0
votes
4
replies
1.8k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
0
votes
16
replies
2.6k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 17.2 years ago by 16k • written 17.2 years ago by ▴ 200
0
votes
1
reply
868
views
cdf file
cdf cdf
updated 17.2 years ago by ★ 1.1k • written 17.2 years ago by ▴ 10
0
votes
0
replies
1.0k
views
QC report
cdf affy affyQCReport cdf affy affyQCReport
17.2 years ago Yisong Zhen ▴ 10
0
votes
0
replies
1.1k
views
heatmap and cdfenv problems
Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus
17.3 years ago lgautier@altern.org ▴ 950
0
votes
2
replies
913
views
affymetrix rat gene ST 1.0 cdf
cdf affy cdf affy
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 830
0
votes
2
replies
938
views
Dmel. Gene Chip 2 tiling array CDF ; Drosophila melanogaster BDGP Release 5 annotation
Annotation cdf Annotation cdf
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 10
0
votes
0
replies
1.1k
views
heatmap and cdfenv problems
Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus
17.3 years ago Hui-Yi Chu ▴ 160
0
votes
7
replies
2.1k
views
Using ReadAffy with custom CDFs on tiling array data
cdf probe affy cdf probe affy
updated 17.3 years ago by ▴ 140 • written 17.3 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Rat Gene 1.0 ST CDF files
cdf affy cdf affy
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 20
0
votes
0
replies
873
views
Bioconductor Digest, Vol 65, Issue 23
cdf probe affy gcrma cdf probe affy gcrma
17.3 years ago Manhong Dai ▴ 200
0
votes
3
replies
1.1k
views
Source code comments / read_abatch
cdf cdf
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ▴ 60
0
votes
6
replies
2.1k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 17.3 years ago by ★ 3.9k • written 17.3 years ago by ▴ 190
0
votes
0
replies
1.1k
views
Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
cdf affy gcrma oligo makePlatformDesign cdf affy gcrma oligo makePlatformDesign
17.3 years ago Benjamin Lansdell ▴ 30
0
votes
1
reply
774
views
Glycov3hscdf package
cdf cdf
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Drosophila tiling array background correction
cdf probe oligo cdf probe oligo
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 30
0
votes
2
replies
1.8k
views
Affxparser: how to create CEL-file from AffyBatch
cdf affxparser Harshlight cdf affxparser Harshlight
updated 17.3 years ago by 68k • written 17.3 years ago by ★ 4.1k
0
votes
0
replies
927
views
Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
17.3 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
2.3k
views
.qcdef file
cdf affyQCReport cdf affyQCReport
updated 17.4 years ago by ▴ 400 • written 17.4 years ago by ▴ 20
0
votes
1
reply
840
views
How I can extract the information of Probe and Probesets location on the microarray
cdf probe cdf probe
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
2
replies
1.7k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
17.4 years ago Glazko, Galina ▴ 350
0
votes
2
replies
1.2k
views
CDF properties
cdf probe cdf probe
updated 17.4 years ago by ▴ 950 • written 17.4 years ago by ▴ 70
0
votes
1
reply
702
views
exon.pmcdf: not a valid package?
cdf cdf
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
1
reply
793
views
The metadata in an Affymetrix CDF
cdf makePlatformDesign cdf makePlatformDesign
17.4 years ago Steve Lianoglou ★ 13k
0
votes
3
replies
1.5k
views
MBNI custom CDF packages
cdf cdf
updated 17.4 years ago by ▴ 200 • written 17.4 years ago by ▴ 200
0
votes
2
replies
1.2k
views
Bug in base.profiles.nc (gcrma)?
cdf gcrma cdf gcrma
updated 17.5 years ago by ▴ 570 • written 17.5 years ago by ★ 2.0k
1
vote
4
replies
5.6k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.5 years ago Hans-Ulrich Klein ▴ 330
0
votes
5
replies
1.6k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 2.0k
0
votes
2
replies
1.0k
views
Can't make.cdf.env from HuEx-1_0-st-v2.text.cdf
cdf cdf
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 230
0
votes
2
replies
1.3k
views
Integrating hgu133a and hgu133a2
hgu133a2 hgu133a cdf affy hgu133a2 hgu133a cdf affy
17.5 years ago Chintanu ▴ 310
0
votes
4
replies
1.9k
views
observations on affyprobeminer
GO rat2302 cdf affy qvalue GO rat2302 cdf affy qvalue
updated 17.5 years ago by ▴ 10 • written 17.5 years ago by ▴ 830
0
votes
3
replies
1.3k
views
filtered CDF file results in errors
yeast2 cdf yeast2 cdf
17.5 years ago Sebastien Gerega ▴ 370
0
votes
3
replies
1.9k
views
Tiling arrays and their probes
cdf affyio cdf affyio
updated 17.5 years ago by ★ 13k • written 17.5 years ago by ★ 13k
0
votes
1
reply
1.1k
views
simpleAffy with bovine cdf
cdf simpleaffy cdf simpleaffy
17.6 years ago • updated 17.5 years ago Paul Geeleher ★ 1.3k
0
votes
2
replies
2.0k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation ExperimentData cdf affy Annotation ExperimentData cdf affy
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 20
0
votes
1
reply
860
views
custom CDF with GC-RMA
cdf probe affy cdf probe affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 30
0
votes
1
reply
988
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 10
0
votes
2
replies
1.1k
views
How to remove some probes from one probeset in the begining?
cdf cdf
updated 17.7 years ago by ★ 2.2k • written 17.7 years ago by ▴ 30
0
votes
2
replies
1.3k
views
probe file for custom array
Microarray Cancer cdf probe gcrma matchprobes Microarray Cancer cdf probe gcrma
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by 68k
927 results • Page 9 of 19
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Comment: Bioconductor 3.22 Released! by residentialplayt • 0
Every run balances on the line between control and collapse. That where [Run3][1] lives on the razor thin edge of reaction, where hesitatio…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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