Showing : cdf • reset
0
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1
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2.0k
views
installing xcms package for R 64-bit
GO Cancer cdf xcms GO Cancer cdf xcms
updated 15.9 years ago by ▴ 10 • written 15.9 years ago by ▴ 40
0
votes
1
reply
977
views
custom CDF version 12.1.0 is released
cdf cdf
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 200
0
votes
1
reply
1.4k
views
QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 15.9 years ago by ▴ 280 • written 16.0 years ago by ▴ 10
0
votes
5
replies
2.1k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
16.0 years ago Michael Walter ▴ 160
0
votes
5
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2.4k
views
GCRMA Error
cdf gcrma cdf gcrma
updated 16.0 years ago by ▴ 260 • written 16.0 years ago by ▴ 50
0
votes
5
replies
2.7k
views
Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 840
0
votes
0
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947
views
[R] Is there a package similar to mogene10stprobeset.dbby for Affymetrix Exon Arrays?
Annotation cdf AnnotationDbi Annotation cdf AnnotationDbi
16.0 years ago Groot, Philip de ▴ 630
0
votes
0
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744
views
pre-processing gene expression data from multiple Affymetrix chip types in one batch
cdf probe cdf probe
16.1 years ago Diana Hubbard ▴ 10
0
votes
8
replies
1.8k
views
affy: expresso in separated steps
Normalization cdf affy Normalization cdf affy
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 90
0
votes
6
replies
2.0k
views
Help Understand flowViz Error
cdf cdf
updated 16.1 years ago by ▴ 580 • written 16.1 years ago by ▴ 50
0
votes
1
reply
1.2k
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 10
0
votes
0
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817
views
I share annotation libraries for the Gene Titan plates
Annotation cdf probe Annotation cdf probe
16.1 years ago Groot, Philip de ▴ 630
0
votes
0
replies
1.1k
views
only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO mouse4302 cdf affy GO mouse4302 cdf affy
16.1 years ago Jarek Bryk ▴ 110
0
votes
2
replies
1.5k
views
exon array annotation files
Annotation Cancer cdf exonmap Annotation Cancer cdf exonmap
updated 16.1 years ago by ▴ 190 • written 16.1 years ago by ▴ 970
0
votes
0
replies
1.3k
views
Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
16.1 years ago rcaloger ▴ 500
0
votes
2
replies
1.5k
views
Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
CDF File for Arabidopsis Tilling Array1.0F
cdf cdf
updated 16.1 years ago by ★ 7.2k • written 16.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 950
0
votes
0
replies
925
views
call of differential expression between close species using microarray data
Microarray cdf limma Microarray cdf limma
16.2 years ago pkuonline ▴ 30
0
votes
1
reply
1.0k
views
RMA values for Affy Mouse Exon array
cdf affy cdf affy
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 70
0
votes
1
reply
1.2k
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 10
0
votes
5
replies
1.3k
views
Inconsistency in RMA results from 'affy' and results from 'oligo'
Annotation cdf oligo Annotation cdf oligo
updated 16.2 years ago by ★ 13k • written 16.2 years ago by ▴ 950
0
votes
2
replies
1.3k
views
Inconsistency in RMA results from 'affy' and results from 'oligo'
cdf oligo cdf oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 950
0
votes
3
replies
1.3k
views
makecdfenv's error (with MoGene-1_0-st-v1.r3.cdf)
cdf cdf
16.2 years ago Peng Yu ▴ 950
0
votes
2
replies
1.8k
views
Custom CDF Version 12 is released
cdf cdf
updated 16.3 years ago by ▴ 200 • written 16.3 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Custom CDF Version 12 is released
SNP cdf SNP cdf
16.3 years ago Manhong Dai ▴ 200
0
votes
1
reply
1.2k
views
Errors using particular 'Affy' package functions
cdf affy cdf affy
updated 16.3 years ago by 6.7k • written 16.3 years ago by ▴ 20
0
votes
2
replies
1.5k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 40
0
votes
1
reply
1.1k
views
CDF file for Affy GeneChip miRNA array
miRNA cdf miRNA cdf
updated 16.3 years ago by ▴ 630 • written 16.3 years ago by ★ 4.1k
0
votes
0
replies
1.1k
views
Error "Specified environment does notcontain MoGene-1_0-st-v1"
Normalization cdf affy Normalization cdf affy
16.3 years ago Groot, Philip de ▴ 630
0
votes
3
replies
1.7k
views
Error "Specified environment does not contain MoGene-1_0-st-v1"
cdf cdf
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 950
0
votes
4
replies
1.2k
views
Creating CDF
cdf cdf
16.3 years ago naresh kumar ▴ 40
0
votes
2
replies
1.9k
views
problem with 2.0 cdf
hgu133plus2 cdf hgu133plus2 cdf
updated 16.3 years ago by ▴ 450 • written 16.3 years ago by ▴ 420
0
votes
1
reply
1.2k
views
HT HG-U133+ PM Array Plate: cdf and probe packages discrepancies
cdf probe cdf probe
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 20
0
votes
0
replies
944
views
Creating one matrix of intensity data from 4 diffrent CEL files
Normalization cdf probe affy BufferedMatrix Normalization cdf probe affy BufferedMatrix
16.3 years ago Radhika Ambatipudi ▴ 20
0
votes
0
replies
706
views
Installation of a custom cdf hs133phsentrezgcdf
Cancer hgu133plus2 cdf Cancer hgu133plus2 cdf
16.4 years ago Martin Morgan 25k
0
votes
1
reply
1.2k
views
Installation of a custom cdf hs133phsentrezgcdf
hgu133plus2 cdf hgu133plus2 cdf
updated 16.4 years ago by ▴ 400 • written 16.4 years ago by ▴ 40
0
votes
0
replies
2.6k
views
comparing affymetrix and agilent microarray data
cdf probe affy cdf probe affy
16.4 years ago Jarek Bryk ▴ 110
0
votes
4
replies
1.4k
views
Affy output
Annotation GO hgu133a2 hgu133plus2 cdf Annotation GO hgu133a2 hgu133plus2 cdf
16.5 years ago Sarmah, Chintanu Kumar ▴ 70
0
votes
1
reply
800
views
CDF packages
cdf cdf
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 80
0
votes
3
replies
2.1k
views
readChp (affxparser) segfaults
SNP cdf affxparser SNP cdf affxparser
updated 16.5 years ago by ★ 6.5k • written 16.5 years ago by ▴ 60
0
votes
0
replies
1.0k
views
analyze/import my normalized/summarized affy data in affylmGUI
cdf affylmGUI cdf affylmGUI
16.5 years ago shirley zhang ★ 1.0k
0
votes
2
replies
1.4k
views
Question regarding Affy SNP 5.0/BI_SNP arrays
SNP Annotation cdf affy PROcess oligo SNP Annotation cdf affy PROcess oligo
updated 16.5 years ago by ▴ 40 • written 16.5 years ago by ▴ 120
0
votes
2
replies
2.4k
views
How to obtain a CDF file
cdf affy cdf affy
updated 16.5 years ago by ★ 1.1k • written 16.5 years ago by ▴ 10
0
votes
9
replies
2.1k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 30
0
votes
4
replies
1.7k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
stuck with creating CDF file for Affymetrix yeast tiling array.
GO cdf GO cdf
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 10
0
votes
2
replies
2.4k
views
RMA implemented in oligo package vs affy package
ExperimentData cdf affy PROcess oligo ExperimentData cdf affy PROcess oligo
16.6 years ago heyi xiao ▴ 360
0
votes
2
replies
1.3k
views
packages for hugene10st
Annotation cdf Annotation cdf
updated 16.6 years ago by ▴ 430 • written 16.6 years ago by ▴ 510
0
votes
2
replies
988
views
CDFs for the HT Rat 230 PM Array
cdf cdf
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 10
927 results • Page 7 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
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