Bioconductor Cel

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2.3k

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CEL RAW geoquery readaffy

updated 9.5 years ago by Sean Davis 21k • written 9.5 years ago by PyPer ▴ 20

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1.4k

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cel affy

updated 7.6 years ago by James W. MacDonald 65k • written 7.6 years ago by libya.tahani • 0

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1.3k

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oligo package Rstudio fatal error microarray CEL

6.4 years ago biostR ▴ 10

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2.0k

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affy cel

8.4 years ago thrabe • 0

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2.5k

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cel

8.2 years ago ranjita_duttaroy • 0

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2.4k

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cel .cel fiels

7.1 years ago farahqureshi5 • 0

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1.9k

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oligo pd.hta.2.0 CEL R windows 7

6.7 years ago ladhikari • 0

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1.1k

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gene expression gene expression data cel affy affymatrix

6.2 years ago torgeirous • 0

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689

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Affymetrix CEL TXT

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by pbachali ▴ 50

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984

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microarray affy cel drugmatrix

updated 3.9 years ago by Gordon Smyth 50k • written 3.9 years ago by peirinl • 0

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2.0k

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pca oligo cel

updated 8.8 years ago by Gabriel Nathan Kaufman, Mr ▴ 60 • written 8.8 years ago by angel.ruvalkba • 0

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1.9k

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limma CEL GEO affydata expresiondataset

updated 8.4 years ago by Robert Castelo ★ 3.3k • written 8.4 years ago by libya.tahani • 0

12 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0