Bioconductor Celegans

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475

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 18 months ago by Enzo.Scifo • 0

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964

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BSgenome Celegans

updated 2.1 years ago by Hervé Pagès 16k • written 2.1 years ago by Tsung-Han • 0

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1.4k

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biomaRt bioconductor celegans annotation

updated 6.3 years ago by Mike Smith ★ 6.5k • written 6.3 years ago by clarisbaby • 0

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945

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celegans Biostrings celegans Biostrings

updated 15.5 years ago by Hervé Pagès 16k • written 15.5 years ago by Elizabeth Purdom ▴ 210

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974

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Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 14.3 years ago by Sean Davis 21k • written 14.3 years ago by Paul Shannon ★ 1.1k

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753

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celegans affy convert celegans affy convert

updated 13.7 years ago by Marc Carlson ★ 7.2k • written 13.7 years ago by Julie Zhu ★ 4.3k

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1.6k

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Gviz celegans

updated 6.3 years ago by Robert Ivanek ▴ 730 • written 6.3 years ago by alex.gos90 ▴ 10

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698

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Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

20.6 years ago James W. MacDonald 65k

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860

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celegans celegans

17.1 years ago Gordon Smyth 50k

9 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k