Bioconductor ColData

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1.3k

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DESeq2 design coldata

updated 21 months ago by swbarnes2 ★ 1.4k • written 21 months ago by arfranco ▴ 130

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1.4k

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ColData pheatmap DESeq2

written 2.6 years ago by dania.khalid • 0

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2.2k

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SingleCellExperiment colData rename

updated 3.0 years ago by Basti ▴ 780 • written 3.0 years ago by achoppe ▴ 10

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976

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BiSeq Coldata

5.7 years ago akhaira • 0

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2.4k

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deseq2 levels factor colData

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by ariel ▴ 20

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50k

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deseq2 coldata

updated 7.2 years ago by swbarnes2 ★ 1.4k • written 7.2 years ago by mjrarcher ▴ 10

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4.8k

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variantannotation coldata

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lvclark ▴ 10

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5.0k

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deseq2 coldata NA

updated 17 months ago by Michael Love 43k • written 7.5 years ago by t.kuilman ▴ 170

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2.2k

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multiassayexperiment colData

updated 8.2 years ago by Levi Waldron ★ 1.1k • written 8.2 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k