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colData
•
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0
votes
6
replies
1.2k
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 20 months ago by
swbarnes2
★ 1.4k • written 20 months ago by
arfranco
▴ 130
0
votes
2
replies
1.4k
views
Heat Map
ColData
pheatmap
DESeq2
written 2.6 years ago by
dania.khalid
• 0
0
votes
1
reply
2.2k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
achoppe
▴ 10
1
vote
0
replies
965
views
Understanding ColData in BiSeq
BiSeq
Coldata
5.6 years ago
akhaira
• 0
2
votes
2
replies
2.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
ariel
▴ 20
4
votes
8
replies
50k
views
What is colData? How do I make one?
deseq2
coldata
updated 7.2 years ago by
swbarnes2
★ 1.4k • written 7.2 years ago by
mjrarcher
▴ 10
1
vote
7
replies
4.5k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
lvclark
▴ 10
0
votes
8
replies
5.0k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 17 months ago by
Michael Love
43k • written 7.4 years ago by
t.kuilman
▴ 170
0
votes
3
replies
2.1k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 8.1 years ago by
Levi Waldron
★ 1.1k • written 8.1 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Replies
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
by
Nguyen
• 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Luca
• 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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mohammedtoufiq91
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James W. MacDonald
68k
Great Question
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fl
▴ 20
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Gordon Smyth
53k
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