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colData
•
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0
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6
replies
1.2k
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 19 months ago by
swbarnes2
★ 1.4k • written 19 months ago by
arfranco
▴ 130
0
votes
2
replies
1.3k
views
Heat Map
ColData
pheatmap
DESeq2
written 2.4 years ago by
dania.khalid
• 0
0
votes
1
reply
2.1k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
achoppe
▴ 10
1
vote
0
replies
937
views
Understanding ColData in BiSeq
BiSeq
Coldata
5.5 years ago
akhaira
• 0
2
votes
2
replies
2.3k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
ariel
▴ 20
4
votes
8
replies
50k
views
What is colData? How do I make one?
deseq2
coldata
updated 7.0 years ago by
swbarnes2
★ 1.4k • written 7.0 years ago by
mjrarcher
▴ 10
1
vote
7
replies
4.3k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 7.2 years ago by
Valerie Obenchain
★ 6.8k • written 7.2 years ago by
lvclark
▴ 10
0
votes
8
replies
4.9k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 15 months ago by
Michael Love
43k • written 7.3 years ago by
t.kuilman
▴ 170
0
votes
3
replies
2.1k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 8.0 years ago by
Levi Waldron
★ 1.1k • written 8.0 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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