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colData
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6
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 9 months ago by
swbarnes2
★ 1.4k • written 9 months ago by
arfranco
▴ 130
0
votes
2
replies
889
views
Heat Map
ColData
pheatmap
DESeq2
written 19 months ago by
dania.khalid
• 0
0
votes
1
reply
1.6k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 23 months ago by
Basti
▴ 780 • written 23 months ago by
achoppe
▴ 10
1
vote
0
replies
759
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.7 years ago
akhaira
• 0
2
votes
2
replies
1.9k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
ariel
▴ 20
4
votes
8
replies
47k
views
What is colData? How do I make one?
deseq2
coldata
updated 6.2 years ago by
swbarnes2
★ 1.4k • written 6.2 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.7k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 6.3 years ago by
Valerie Obenchain
★ 6.8k • written 6.4 years ago by
lvclark
▴ 10
0
votes
8
replies
4.3k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5 months ago by
Michael Love
43k • written 6.5 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.7k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 7.2 years ago by
Levi Waldron
★ 1.1k • written 7.2 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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