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colData
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 9 months ago by
swbarnes2
★ 1.4k • written 9 months ago by
arfranco
▴ 130
0
votes
2
replies
885
views
Heat Map
ColData
pheatmap
DESeq2
written 19 months ago by
dania.khalid
• 0
0
votes
1
reply
1.6k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 23 months ago by
Basti
▴ 780 • written 23 months ago by
achoppe
▴ 10
1
vote
0
replies
757
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.7 years ago
akhaira
• 0
2
votes
2
replies
1.9k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
ariel
▴ 20
4
votes
8
replies
47k
views
What is colData? How do I make one?
deseq2
coldata
updated 6.2 years ago by
swbarnes2
★ 1.4k • written 6.2 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.7k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 6.3 years ago by
Valerie Obenchain
★ 6.8k • written 6.4 years ago by
lvclark
▴ 10
0
votes
8
replies
4.3k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5 months ago by
Michael Love
43k • written 6.5 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.7k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 7.2 years ago by
Levi Waldron
★ 1.1k • written 7.2 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
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