Bioconductor ColData

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DESeq2 design coldata

updated 21 months ago by swbarnes2 ★ 1.4k • written 21 months ago by arfranco ▴ 130

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1.4k

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ColData pheatmap DESeq2

written 2.6 years ago by dania.khalid • 0

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2.2k

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SingleCellExperiment colData rename

updated 3.0 years ago by Basti ▴ 780 • written 3.0 years ago by achoppe ▴ 10

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981

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BiSeq Coldata

5.7 years ago akhaira • 0

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2.4k

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deseq2 levels factor colData

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by ariel ▴ 20

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50k

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deseq2 coldata

updated 7.2 years ago by swbarnes2 ★ 1.4k • written 7.3 years ago by mjrarcher ▴ 10

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4.9k

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variantannotation coldata

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lvclark ▴ 10

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5.0k

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deseq2 coldata NA

updated 18 months ago by Michael Love 43k • written 7.5 years ago by t.kuilman ▴ 170

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2.2k

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multiassayexperiment colData

updated 8.2 years ago by Levi Waldron ★ 1.1k • written 8.2 years ago by Lluís Revilla Sancho ▴ 760

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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