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colData
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6
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 6 months ago by
swbarnes2
★ 1.4k • written 6 months ago by
arfranco
▴ 130
0
votes
2
replies
812
views
Heat Map
ColData
pheatmap
DESeq2
written 17 months ago by
dania.khalid
• 0
0
votes
1
reply
1.5k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
achoppe
▴ 10
1
vote
0
replies
714
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.5 years ago
akhaira
• 0
2
votes
2
replies
1.8k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
ariel
▴ 20
4
votes
8
replies
46k
views
What is colData? How do I make one?
deseq2
coldata
updated 6.0 years ago by
swbarnes2
★ 1.4k • written 6.0 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.6k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.2 years ago by
lvclark
▴ 10
0
votes
8
replies
4.1k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 3 months ago by
Michael Love
42k • written 6.3 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.7k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 7.0 years ago by
Levi Waldron
★ 1.1k • written 7.0 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
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Gordon Smyth
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You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
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Gordon Smyth
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GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
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