Bioconductor Color

Showing : color • reset

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1.1k

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plot color Gviz utr

4.7 years ago ginlucks • 0

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2.2k

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DiffBind plot color

updated 5.9 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by melnuesch ▴ 10

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7.9k

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limma microarray volcanoplot color

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by dmm204 • 0

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2.4k

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phyloseq color ggplot2

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by sarahmacdonald86 • 0

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1.5k

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diffbind color

updated 9.0 years ago by Gord Brown ▴ 670 • written 9.0 years ago by Gary ▴ 20

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1.7k

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Gviz color

updated 9.3 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.3 years ago by Malcolm Cook ★ 1.6k

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1.4k

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color GeneRegionTrack

9.5 years ago senanu.pearson • 0

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5.0k

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DESeq2 color R package

updated 9.6 years ago by Mike Smith ★ 6.6k • written 9.6 years ago by ChIP-Tease • 0

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2.8k

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ggbio autoplot color vignette

updated 9.9 years ago by aaron ▴ 10 • written 9.9 years ago by timothypyork • 0

9 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k