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Showing :
continuous
•
reset
3
votes
12
replies
1.6k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.2 years ago
ariel
▴ 20
3
votes
7
replies
1.6k
views
single continuous factor
edger
design matrix
continuous
updated 2.2 years ago by
Tongjun
• 0 • written 6.0 years ago by
ashley.lu
• 0
8
votes
3
replies
2.7k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.6 years ago
lanhuong
▴ 20
6
votes
3
replies
5.5k
views
Calculating contrasts for continuous variable anad interaction effect in Limma
limma design matrix
design and contrast matrix
continuous
interactions
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
jaison75
▴ 20
1
vote
2
replies
1.4k
views
WGCNA - confounding effect based on technical variables (some continuous)
WGCNA
batch effect
continuous
updated 5.2 years ago by
Peter Langfelder
★ 3.0k • written 5.2 years ago by
cats_dogs
▴ 20
13
votes
2
replies
6.4k
views
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
limma
covariate
continuous
categorical
adjustment
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
sg45653
• 0
1
vote
2
replies
1.9k
views
RUVSEq and VSD integration
deseq2
ruvseq
covariates
continuous
vsd
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
Mattia
▴ 10
1
vote
2
replies
1.4k
views
metagenomeSeq for continuous phenotype
metagenomeseq
continuous
limma
7.8 years ago
pjgalli2
• 0
1
vote
2
replies
791
views
EdgeR -- differentially expressed genes across a continuous variable
edger
continuous
regression
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
emb13
• 0
0
votes
1
reply
1.1k
views
Analyzing a continuous phenotype using DESeq2
DESeq2
continuous
7.8 years ago
pjgalli2
• 0
0
votes
1
reply
556
views
DESeq2 with 2 continuous factors, LRT, coeficients and slope
DESeq2
LRT
continuous
coeficients
updated 15 months ago by
Michael Love
42k • written 15 months ago by
Laia
▴ 10
0
votes
1
reply
751
views
Isolate contrasts in DESeq2 while using a combination of categorical and continuous variables
Contrast
design
DESeq2
continuous
updated 2.4 years ago by
Michael Love
42k • written 2.4 years ago by
tiansy
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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DevelopingHippo
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Robert Castelo
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