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Showing :
copywriter
•
reset
0
votes
2
replies
790
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
18 months ago
fer_talavera
• 0
0
votes
1
reply
892
views
CopywriteR output
CopywriteR
updated 18 months ago by
fer_talavera
• 0 • written 3.9 years ago by
Joshua
• 0
2
votes
4
replies
1.4k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 5.4 years ago by
oscarkrijgsman
▴ 20 • written 5.5 years ago by
Ram
▴ 220
0
votes
1
reply
1.3k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 7.1 years ago by
t.kuilman
▴ 170 • written 7.1 years ago by
magdaaverte
• 0
3
votes
12
replies
2.9k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
TriS
▴ 200
1
vote
2
replies
2.1k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.4k
views
Problems with CopywriteR
copywriter
updated 8.6 years ago by
t.kuilman
▴ 170 • written 8.6 years ago by
filipzembol
• 0
0
votes
1
reply
2.1k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.8k
views
CopywriteR error: "Error in .Method"
CopywriteR
9.2 years ago
Tom
▴ 10
1
vote
3
replies
1.8k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 9.4 years ago by
t.kuilman
▴ 170 • written 9.4 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.6k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.6 years ago by
jcarter
• 0
2
votes
4
replies
2.9k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.6 years ago by
jcarter
• 0
1
vote
2
replies
1.6k
views
Copywriter output looks strange
copywriter
9.6 years ago
MatthewGField
▴ 10
2
votes
9
replies
3.3k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.7 years ago by
smcnulty
• 0
0
votes
7
replies
2.6k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.6 years ago by
smcnulty
• 0
0
votes
1
reply
1.7k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.6 years ago by
sshung
• 0
2
votes
1
reply
1.6k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 9.8 years ago by
t.kuilman
▴ 170 • written 9.8 years ago by
Felix
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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