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Showing :
copywriter
•
reset
0
votes
0
replies
465
views
CopywriteR output
CopywriteR
2.4 years ago
Joshua
• 0
2
votes
4
replies
832
views
CopywriteR job runs out of memory
copywriter
cnv
updated 3.9 years ago by
oscarkrijgsman
▴ 20 • written 3.9 years ago by
Ram
▴ 190
0
votes
1
reply
860
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.5 years ago by
t.kuilman
▴ 170 • written 5.5 years ago by
magdaaverte
• 0
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
TriS
▴ 200
1
vote
2
replies
1.7k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.0k
views
Problems with CopywriteR
copywriter
updated 7.0 years ago by
t.kuilman
▴ 170 • written 7.0 years ago by
filipzembol
• 0
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.6 years ago by
t.kuilman
▴ 170 • written 7.6 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.3k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.7 years ago
Tom
▴ 10
1
vote
3
replies
1.3k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
thestaroceanster
• 0
3
votes
3
replies
3.7k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
2
votes
4
replies
2.2k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
1
vote
2
replies
1.2k
views
Copywriter output looks strange
copywriter
8.1 years ago
MatthewGField
▴ 10
2
votes
9
replies
2.4k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
smcnulty
• 0
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
smcnulty
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
sshung
• 0
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
Felix
• 0
16 results • Page
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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