Bioconductor Decidetests

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1.1k

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decideTests topTable limma

updated 18 months ago by Gordon Smyth 52k • written 18 months ago by Anna ▴ 20

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826

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edgeR voom decidetests DEG

updated 20 months ago by Gordon Smyth 52k • written 20 months ago by Ankita • 0

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1.5k

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limma eBayes decideTests topTable

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by irene.roman • 0

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1.5k

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limma stageR decideTests

updated 5.9 years ago by Koen Van den Berge ▴ 180 • written 5.9 years ago by maltethodberg ▴ 180

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919

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limma decidetests

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by Ryan C. Thompson ★ 7.9k

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1.7k

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limma anova decidetests

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by mikhael.manurung ▴ 280

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1.4k

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limma decidetests

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by jamie.gearing ▴ 60

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1.1k

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limma decidetests

updated 8.1 years ago by Gordon Smyth 52k • written 8.1 years ago by ahmed.asadik • 0

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1.9k

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limma decidetests

updated 8.2 years ago by Axel Klenk ★ 1.0k • written 8.2 years ago by bi_Scholar • 0

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1.4k

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limma decidetests methylation

updated 8.8 years ago by Sean Davis 21k • written 8.8 years ago by kraiczy ▴ 10

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3.6k

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rnaseq decideTests limma qvalue

9.5 years ago anver • 0

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5.6k

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limma B stats decideTests

updated 2.4 years ago by chm • 0 • written 9.7 years ago by Elsa • 0

12 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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