Showing : deseq2 • reset
2
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7
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deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
7 days ago • updated 4 days ago sajadahmad41454 • 0
2
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4
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59
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
19 hours ago • updated 3 minutes ago pangtaihin • 0
0
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2
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1.5k
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 5 days ago by • 0 • written 15 months ago by ▴ 10
0
votes
1
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89
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normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 6 days ago by ★ 4.1k • written 6 days ago by • 0
0
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1
reply
47
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
updated 1 day ago by 42k • written 2 days ago by ▴ 30
0
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8
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438
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Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2 pcaExplorer
updated 1 day ago by ▴ 30 • written 2 days ago by • 0
0
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3
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78
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Assymetric MA plot with no overall trend
DESeq2 DifferentialExpression
updated 16 hours ago by 42k • written 1 day ago by • 0
0
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1
reply
60
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normalization across different species for DESeq2 analysis
DESeq2 normalization Normalization acrossspecies
updated 1 day ago by 42k • written 2 days ago by • 0
0
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1
reply
130
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Differential gene expression analysis results
DESeq2 DifferentialExpression
updated 5 days ago by ★ 4.1k • written 5 days ago by • 0
9 results • Page 1 of 1
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Replies
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by pangtaihin • 0
Thank you! But I apologize for cannot fully grasp your point. Do you mean that when the counts are high, rlogged matrix can represent the t…
Comment: Query regarding phyloseq object construct with QIIME output by Rosso • 0
Constructing a phyloseq object from QIIME output involves several steps to integrate taxonomic abundance data, sample metadata, and phyloge…
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Votes
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
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