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download
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reset
2
votes
9
replies
1.8k
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broken download for source tarball of BiocInstaller 1.16.3
download
biocinstaller
8.8 years ago
kenneth.hoste
▴ 20
3
votes
3
replies
1.1k
views
Accessing old download statistics
bioconductor
download
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
kristoffer.vittingseerup
▴ 20
0
votes
1
reply
1.3k
views
Course material from a previous event is not available
course-material
download
software error
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
jdavison
▴ 10
1
vote
3
replies
1.3k
views
Bioconductor Software download
biocinstaller
bioconductor
download
7.0 years ago
s.munster
▴ 40
0
votes
1
reply
1.1k
views
Error downloading the package
tcgabiolinks
TCGA
DOWNLOAD
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
sup230
▴ 30
2
votes
2
replies
2.2k
views
TCGAbiolinks Download ERROR
TCGA
tcgabiolinks
download
error
updated 6.5 years ago by
eshelden
▴ 40 • written 6.5 years ago by
Talip Zengin
▴ 10
3
votes
2
replies
379
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
8 months ago
luca.s
▴ 50
0
votes
1
reply
1.9k
views
How to change download folder
download
installation
updated 9.5 years ago by
Andrzej Oleś
▴ 750 • written 9.5 years ago by
yxswhx
• 0
1
vote
3
replies
2.0k
views
Error via running GDCdownload() in TCGAbiolinks
TCGAbiolinks
TCGA
Download
updated 5.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 5.1 years ago by
modarzi
▴ 10
3
votes
4
replies
1.1k
views
AnnotationDbi 1.46.0 not available in archive of Bioconductor 3.9 release?
download
updated 4.7 years ago by
kayla.interdonato
▴ 160 • written 4.7 years ago by
kenneth.hoste
▴ 20
1
vote
1
reply
695
views
is something like method="wget" possible with BiocManager::install ?
BiocManager::install
download
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
lejeczek
▴ 10
0
votes
1
reply
659
views
Why can't I download Bioconductor????
download
6.0 years ago
Lb408
• 0
12 results • Page
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Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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