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duplicate
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GenomicInteractions duplicate annotations
duplicate
GenomicInteractions
4.0 years ago
dogancan
• 0
1
vote
3
replies
3.0k
views
duplicated row names when creating DESeqDataSetFromMatrix
deseq2
DESeqDataSetFromMatrix
duplicate
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.3 years ago by
Laurent Gatto
1.6k • written 6.3 years ago by
joris.vanhoutven
▴ 10
2
votes
1
reply
1.4k
views
How to remmove duplicated paired end alignments
alignment
duplicate
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
Frocha
▴ 20
3
votes
16
replies
4.1k
views
Any way to proceed duplicate removal for list of GRanges object ?
r
grangeslist
duplicate
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Jurat Shahidin
▴ 80
3
votes
3
replies
2.0k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
7.3 years ago
Jose Luis Soto Vázquez
• 0
6 results • Page
1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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