Bioconductor Ebayes

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topTable MicroarrayData ebayes limma Microarray

4.9 years ago snijesh ▴ 200

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2.1k

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limma eBayes decideTests topTable

updated 5.9 years ago by Gordon Smyth 53k • written 5.9 years ago by irene.roman • 0

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limma eBayes

updated 6.9 years ago by Gordon Smyth 53k • written 6.9 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 20 months ago by Gordon Smyth 53k • written 7.3 years ago by CantExitVIM ▴ 10

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2.4k

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model.matrix lmFit eBayes GEOquery limma

7.9 years ago darthratus • 0

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1.9k

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ebayes limma bioconductor

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by reventropy2003 ▴ 10

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2.9k

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ebayes limma

8.3 years ago peirinl • 0

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2.1k

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eBayes limma error

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by calen.p.ryan • 0

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ebayes limma voom

8.9 years ago bag59 • 0

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2.5k

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limma ebayes

updated 2.8 years ago by Gordon Smyth 53k • written 9.0 years ago by cemcdono • 0

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1.3k

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limma ebayes

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.6 years ago by James W. MacDonald 68k • written 10.6 years ago by Vani ▴ 20

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2.4k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 11.0 years ago by Gordon Smyth 53k • written 11.0 years ago by Paulo Nuin ▴ 200

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Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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