Bioconductor Ebayes

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topTable MicroarrayData ebayes limma Microarray

4.8 years ago snijesh ▴ 200

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2.0k

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limma eBayes decideTests topTable

updated 5.8 years ago by Gordon Smyth 53k • written 5.8 years ago by irene.roman • 0

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limma eBayes

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 19 months ago by Gordon Smyth 53k • written 7.2 years ago by CantExitVIM ▴ 10

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2.3k

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model.matrix lmFit eBayes GEOquery limma

7.8 years ago darthratus • 0

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1.9k

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ebayes limma bioconductor

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by reventropy2003 ▴ 10

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ebayes limma

8.2 years ago peirinl • 0

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2.1k

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eBayes limma error

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by calen.p.ryan • 0

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ebayes limma voom

8.8 years ago bag59 • 0

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2.5k

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limma ebayes

updated 2.7 years ago by Gordon Smyth 53k • written 8.9 years ago by cemcdono • 0

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1.3k

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limma ebayes

updated 10.1 years ago by Aaron Lun ★ 29k • written 10.1 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.3 years ago by Gordon Smyth 53k • written 10.4 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Vani ▴ 20

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2.4k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.9 years ago by Gordon Smyth 53k • written 10.9 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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