Bioconductor EmptyDrops

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4.4k

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DropletUtils EmptyDrops simpleSingleCell

updated 20 months ago by Stefano Mangiola ▴ 10 • written 4.7 years ago by shbrief ▴ 20

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2.3k

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

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2.0k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.5 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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1.0k

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DropletUtils emptyDrops 10x

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by Peter Hickey ▴ 740

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1.0k

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dropletutils emptydrops

updated 4.9 years ago by Aaron Lun ★ 28k • written 5.0 years ago by rosano • 0

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656

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SingleCell emptyDrops 10X

updated 11 months ago by Peter Hickey ▴ 740 • written 11 months ago by sandra.garces.19 • 0

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198

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CellRanger emptyDrops scRNAseq 10X

5 weeks ago rocanja ▴ 60

7 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0