Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
simpleSingleCell
•
reset
4
votes
5
replies
2.1k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 3.8 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
C T
▴ 140
4
votes
6
replies
1.3k
views
Feature selection across batches in simpleSingleCell when spike-ins are not available.
simpleSingleCell
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
Angelos Armen
• 0
1
vote
1
reply
717
views
Feature selection across batches in simpleSingleCell "Correcting batch effects" vignette
simpleSingleCell
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
Angelos Armen
• 0
5
votes
1
reply
4.7k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 23 months ago by
Stefano Mangiola
▴ 10 • written 5.0 years ago by
shbrief
▴ 20
1
vote
5
replies
1.8k
views
Preprocessing in scran::doubletCells
scran
simpleSingleCell
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Angelos Armen
• 0
4
votes
4
replies
2.9k
views
using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-seq data
limma
edgeR
simplesingleCell
scran
scater
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Bogdan
▴ 670
4
votes
2
replies
1.7k
views
single cell data: adding random effects for subject with multilevel experiment design
SingleCellExperiment
scran
limma
simpleSingleCell
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Matt Mulé
• 0
1
vote
3
replies
1.7k
views
Troubles with barcodeRanks()
DropletUtils
SingleCellExperiement
DelayedArray
simpleSingleCell
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
Steve Pederson
▴ 170
7
votes
2
replies
2.5k
views
Recommendations for combining multiple 10x runs into one SingleCellExperiment
singlecellexperiment
dropletutils
simplesinglecell
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Peter Hickey
▴ 740
0
votes
1
reply
904
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
es.azadian
• 0
0
votes
1
reply
996
views
The explanation of plotExplanatoryVariables plot
simplesinglecell
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
Xingyu
• 0
1
vote
2
replies
1.9k
views
SingleCellExperiment object cannot be used by Scater package?
scater
singlecellexperiment
simplesinglecell
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
Xingyu
• 0
3
votes
2
replies
3.3k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
sandmann.t
▴ 70
13 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
France,
6 minutes ago
Ann Arbor,
14 minutes ago
San Diego,
24 minutes ago
United States,
41 minutes ago
United States,
49 minutes ago
Traffic: 692 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6