Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.1 years ago by Aaron Lun ★ 28k • written 5.3 years ago by C T ▴ 140

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1.5k

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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833

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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5.0k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.3 years ago by Stefano Mangiola ▴ 20 • written 5.3 years ago by shbrief ▴ 20

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1.9k

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scran simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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3.1k

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limma edgeR simplesingleCell scran scater

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Steve Pederson ▴ 170

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2.9k

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singlecellexperiment dropletutils simplesinglecell

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Peter Hickey ▴ 740

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1.0k

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workflows simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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3.6k

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scater simpleSingleCell workflows

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

Votes

Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

Awards • All

Scholar to Aaron Lun ★ 28k

Teacher to Michael Love 43k

Popular Question to Dario Strbenac ★ 1.5k

Scholar to ATpoint ★ 4.6k