Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

5.2 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

6.5 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 7.0 years ago by Thomas Maurel ▴ 790 • written 7.0 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by andrew.j.skelton73 ▴ 360

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biomart ensembl ensemble mart entrez gene identifiers

7.3 years ago serpalma.v ▴ 60

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ensemble mart ensembl biomart ensembl release News

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R biomart ensemble mart

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Gabriela Santos • 0

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Answer: Handling NA's in Deseq2 by ATpoint ★ 2.9k

DESeq2 objects are SummarizedExperiments and these follow standard R rules. If you had an object `dds` with a column `group` then you wo…

Comment: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct by Marshall • 0

@[avatar game][1] Thanks for support. [1]: https://avatargame2.com

Answer: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

You hit on the right solution with your final example. Here's a slightly modified version where I've given names to the list elements in `…

Comment: Can VST-transformed community composition data be expressed as relative abundanc by dwas • 0

Thank you for your fast and helpful clarifications. I must have understood the pseudo-counts wrong (the video episode CC195 of the Riffomo…

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

limma already adjusts for the baseline expression level of each subject. Trying to include baseline expression explicitly in the linear mod…

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A: Generating a proper TxDb instance from NCBI GFF Annotations File

A: VariantAnnotation non-model species

A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen

Using R package 'limma' on pre-normalized counts and the effect of non-equivalent reads/sample on limma linear model

A: What can I do if I only have TPM but not raw counts data?

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Teacher to deeenes ▴ 30