Biostar Ensemble mart

Showing : ensemble mart • reset

votes

replies

1.2k

views

biomart ensemble mart

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by andrew.j.skelton73 ▴ 360

vote

replies

2.0k

views

R biomart ensemble mart

updated 7.4 years ago by Hervé Pagès 16k • written 7.4 years ago by Gabriela Santos • 0

votes

replies

855

views

biomart regulatory ensemble mart ensembldb

updated 6.8 years ago by Thomas Maurel ▴ 790 • written 6.8 years ago by Sigve Nakken ▴ 50

votes

873

views

biomart ensemblbiomart ensemble mart

5.0 years ago emmak ▴ 20

votes

replies

980

views

biomart ensembl ensemble mart entrez gene identifiers

7.1 years ago serpalma.v ▴ 60

votes

replies

886

views

ensembl ensemble mart ensembl mart biomart News

6.3 years ago amonida ▴ 20

votes

replies

1.3k

views

ensemble mart ensembl biomart ensembl release News

7.3 years ago amonida ▴ 20

7 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0

Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k

I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561

Comment: FlowSOM with unrelated channels by helucro ▴ 70

Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…

Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.6k

It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them: cou…

Votes

Comment: FlowSOM with unrelated channels

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar

Answer: Can I run DESeq2 with SMART-Seq data

Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData

A: Compare and filter two BAM files, one record at a time

Awards • All

Teacher to Michael Love 39k