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ensemblvep
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0
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111
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RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
9 weeks ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
368
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 11 months ago by
Michael Love
41k • written 11 months ago by
DHARMESH
• 0
2
votes
3
replies
1.4k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
15 months ago
jtaylor-predicine
• 0
0
votes
1
reply
748
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.3k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.1 years ago • updated 2.9 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
4.7 years ago
ycchang
• 0
2
votes
3
replies
1.4k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 5.0 years ago by
Valerie Obenchain
★ 6.8k • written 5.0 years ago by
mumichae
▴ 20
2
votes
5
replies
2.2k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.2k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.0 years ago by
shepherl
3.8k • written 6.0 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
6.8 years ago
mlrubio
• 0
0
votes
0
replies
1.6k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
6.9 years ago
mikko.arvas
• 0
0
votes
1
reply
848
views
ensemblVEP problem with MySQL database
ensemblvep
7.6 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.3k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.0k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Guest User
★ 13k
0
votes
5
replies
1.9k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 10.9 years ago by
Valerie Obenchain
★ 6.8k • written 10.9 years ago by
Guest User
★ 13k
19 results • Page
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Recent ...
Replies
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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