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epicv2
•
reset
1
vote
2
replies
1.4k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
8 months ago
Joshua Llano
• 0
2
votes
7
replies
4.0k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 13 months ago by
icecreamlover
• 0 • written 14 months ago by
nurkenber
• 0
1
vote
9
replies
3.8k
views
Error using champ.import
ChAMP
EPICv2
updated 13 months ago by
Ricky
• 0 • written 2.4 years ago by
medha.suman
• 0
0
votes
0
replies
451
views
DMRcate pcutoff setting
EpicV2
DMRcate
14 months ago
kitzhu
• 0
1
vote
4
replies
2.4k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 4 months ago by
MargaretJDinan
• 0 • written 17 months ago by
luca.s
▴ 50
0
votes
4
replies
2.4k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 5 months ago by
Mancy
• 0 • written 18 months ago by
archibold.mposhi
• 0
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 18 months ago by
Gordon Smyth
53k • written 19 months ago by
Kim
• 0
1
vote
3
replies
2.2k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
21 months ago • updated 14 months ago
s.malik
• 0
0
votes
4
replies
2.4k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
3.5k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 13 months ago by
icecreamlover
• 0 • written 23 months ago by
ChunkyJones
• 0
3
votes
5
replies
2.3k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 20 months ago by
aldea85
• 0 • written 2.1 years ago by
Courtney
▴ 10
1
vote
6
replies
3.4k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 2.2 years ago by
Zuguang Gu
▴ 290 • written 2.3 years ago by
Izabela.ams
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: GOseq Probability Weight Function bad fit
by
ejasge.r.m
• 0
When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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