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epicv2
•
reset
1
vote
3
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140
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SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
3 days ago
luca.s
▴ 50
0
votes
0
replies
100
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
17 days ago
archibold.mposhi
• 0
1
vote
8
replies
2.1k
views
Error using champ.import
ChAMP
EPICv2
updated 29 days ago by
549823162
• 0 • written 12 months ago by
medha.suman
• 0
3
votes
2
replies
530
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 29 days ago by
Gordon Smyth
51k • written 8 weeks ago by
Kim
• 0
0
votes
1
reply
380
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 3 months ago by
belinda.phipson
▴ 40 • written 3 months ago by
s.malik
• 0
0
votes
4
replies
654
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 4 months ago by
James W. MacDonald
66k • written 4 months ago by
rae.alshammari
▴ 10
0
votes
2
replies
973
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 4 months ago by
shuo
• 0 • written 5 months ago by
ChunkyJones
• 0
2
votes
5
replies
1.0k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 3 months ago by
aldea85
• 0 • written 7 months ago by
Courtney
• 0
0
votes
6
replies
1.9k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 9 months ago by
Zuguang Gu
▴ 270 • written 10 months ago by
Izabela.ams
• 0
9 results • Page
1 of 1
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Replies
Answer: Ranking the GSEA Results
by
Michael Love
42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Gordon Smyth
51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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