Bioconductor Epicv2

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1.7k

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EpicV2 ChAMPdata

updated 12 weeks ago by icecreamlover • 0 • written 3 months ago by nurkenber • 0

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3.1k

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ChAMP EPICv2

updated 3 months ago by Ricky • 0 • written 19 months ago by medha.suman • 0

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220

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EpicV2 DMRcate

3 months ago kitzhu • 0

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1.1k

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sesame EPICv2manifest epicv2

7 months ago luca.s ▴ 50

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735

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sesameData EPICv2 EPICv1

updated 3 months ago by zhouwanding ▴ 20 • written 7 months ago by archibold.mposhi • 0

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833

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limma DMRcate MethylationArray EPICV2

updated 8 months ago by Gordon Smyth 52k • written 9 months ago by Kim • 0

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1.6k

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DNAMethylation GO MethylationArray missMethyl EPICv2

11 months ago • updated 4 months ago s.malik • 0

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1.5k

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 11 months ago by James W. MacDonald 67k • written 11 months ago by rae.alshammari ▴ 10

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2.4k

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ChAMP EPICv2

updated 12 weeks ago by icecreamlover • 0 • written 12 months ago by ChunkyJones • 0

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1.6k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 10 months ago by aldea85 • 0 • written 14 months ago by Courtney • 0

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2.7k

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minfiDataEPIC EpicV2

updated 16 months ago by Zuguang Gu ▴ 290 • written 17 months ago by Izabela.ams • 0

11 results • Page 1 of 1

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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