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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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12 months ago Maria Doyle ▴ 70
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago Maria Doyle ▴ 70
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago Maria Doyle ▴ 70
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News: Translation Hackathon (community event) announcement
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22 months ago kozo.nishida • 0
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.3 years ago shepherl 3.8k
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2018 Toronto Bioconductor Conference registration details?
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updated 6.4 years ago by 25k • written 6.4 years ago by • 0
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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
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SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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Scholar to James W. MacDonald 65k
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