Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fgsea
•
reset
0
votes
0
replies
10
views
fgsea significant result
fgsea
1 hour ago
Chris
• 0
0
votes
0
replies
73
views
Empty table plot using plotGseaTable()
fgsea
3 days ago • updated 1 day ago
Chris
• 0
1
vote
1
reply
211
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
updated 1 day ago by
Gordon Smyth
50k • written 2 days ago by
gene_bioconductor
▴ 10
2
votes
2
replies
184
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
5 days ago
Chris
• 0
0
votes
4
replies
197
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
16 days ago
sropri
• 0
0
votes
2
replies
355
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
6 weeks ago • updated 4 weeks ago
Gordon
• 0
1
vote
5
replies
344
views
fgsea fork
fgsea
updated 5 weeks ago by
James W. MacDonald
65k • written 5 weeks ago by
yimjohns
• 0
0
votes
5
replies
490
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 11 weeks ago by
James W. MacDonald
65k • written 12 weeks ago by
Gordon
• 0
3
votes
2
replies
388
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
8 months ago
luca.s
▴ 50
0
votes
0
replies
616
views
using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
0
votes
0
replies
838
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
7
votes
6
replies
2.1k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 16 months ago by
Gordon Smyth
50k • written 17 months ago by
nhaus
▴ 30
0
votes
0
replies
372
views
is it possible to limit fgsea to particular tissue type?
fgsea
17 months ago
kavator
▴ 30
0
votes
4
replies
1.1k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt
GO
ensembldb
fgsea
19 months ago
dario.beraldi
• 0
0
votes
7
replies
1.8k
views
Problem with fgsea
fgsea
updated 2.1 years ago by
alserg
▴ 260 • written 2.1 years ago by
Barista
• 0
2
votes
3
replies
3.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r
fgsea
2.3 years ago
amir.khan
• 0
0
votes
1
reply
2.4k
views
Tied Ranks in fgsea
fgsea
updated 3.0 years ago by
Guido Hooiveld
★ 3.9k • written 3.0 years ago by
zli1
• 0
2
votes
3
replies
1.8k
views
Compute fgsea with my own database with R version 4.0.2
R
fgsea
updated 3.0 years ago by
alserg
▴ 260 • written 3.0 years ago by
julie.hardy
• 0
3
votes
3
replies
4.1k
views
Warning with the example of GSEA
fgsea
fgse
3.1 years ago • updated 3.0 years ago
julie.hardy
• 0
2
votes
2
replies
2.3k
views
fgsea usage question - what gene set to use?
fgsea
3.2 years ago
alexandr.gopanenko
▴ 50
0
votes
2
replies
1.6k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
yueli7
▴ 20
0
votes
3
replies
2.2k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea
DESeq2
updated 3.2 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
kavator
▴ 30
0
votes
1
reply
1.0k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 3.8 years ago by
alserg
▴ 260 • written 3.8 years ago by
kavator
▴ 30
1
vote
2
replies
1.5k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 3.9 years ago by
alserg
▴ 260 • written 3.9 years ago by
kavator
▴ 30
3
votes
2
replies
1.4k
views
Calculate S/N ratios from apeglm for GSEA
apeglm
fgsea
Signal-To-Noise Ratio
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
coulsonr
▴ 20
8
votes
5
replies
3.5k
views
How to get t-statistic values using edgeR?
r
edger
t-statistic
fgsea
gsea
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Biologist
▴ 110
0
votes
3
replies
2.8k
views
fgsea p-values are mostly the same upon analysis
fgsea
gsea
sc-rnaseq
5.8 years ago
atakanekiz
▴ 30
1
vote
2
replies
1.8k
views
ReactomePA / Reactome: GSEA error message
reactomepa
reactome
gsea
fgsea
5.9 years ago
martin.busch
• 0
1
vote
5
replies
2.1k
views
FGSEA only runs with <1000 permutations
fgsea
gsea
updated 6.8 years ago by
alserg
▴ 260 • written 6.8 years ago by
shawn.w.foley
• 0
0
votes
8
replies
2.8k
views
Does fgsea order the stats argument?
fgsea
6.9 years ago
rubi
▴ 110
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.0 years ago by
willem.ligtenberg
▴ 150 • written 7.0 years ago by
alserg
▴ 260
2
votes
1
reply
1.5k
views
Direction aware fgsea test
fgsea
gsea
updated 7.3 years ago by
alserg
▴ 260 • written 7.3 years ago by
rubi
▴ 110
32 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
France,
just now
WEHI, Melbourne, Australia,
14 minutes ago
Australia,
19 minutes ago
United States,
31 minutes ago
United States,
51 minutes ago
Traffic: 695 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6