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fourcseq
•
reset
1
vote
10
replies
2.1k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
2
votes
4
replies
2.2k
views
FourCSeq - how many bases to trim with countFragmentOverlaps
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.6 years ago by
francesc.lopez
• 0
4
votes
27
replies
3.7k
views
FourCseq - error countFragmentOverlaps()
FourCseq
fourcseq
updated 8.9 years ago by
ericaenjoy3
• 0 • written 8.9 years ago by
Theo
▴ 10
0
votes
7
replies
2.0k
views
FourCseq -problem with countFragmentOverlaps
FourCseq
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
dzis
• 0
0
votes
7
replies
2.5k
views
fourCseq - error getZscores
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.4 years ago by
samuel collombet
▴ 140
0
votes
3
replies
1.1k
views
[FourCSeq] plotDifferences and plotZscores
fourcseq
7.9 years ago • updated 7.8 years ago
fidlay
• 0
3
votes
8
replies
1.7k
views
FourCSeq - how to write tables with the results
fourcseq
updated 5.5 years ago by
ferbecneu
• 0 • written 8.6 years ago by
francesc.lopez
• 0
2
votes
4
replies
1.4k
views
fourCseq - zscore distribution - trans interractions
fourCseq
updated 9.0 years ago by
Martin Morgan
25k • written 9.5 years ago by
samuel collombet
▴ 140
0
votes
4
replies
1.2k
views
fourCseq - getDifferences and normnalisation
fourcseq
updated 9.5 years ago by
felix.klein
▴ 150 • written 9.5 years ago by
samuel collombet
▴ 140
1
vote
8
replies
1.6k
views
FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
7.8 years ago
Theo
▴ 10
0
votes
3
replies
1.3k
views
Error in "getZScores()" while running FourCSeq package
fourcseq
8.1 years ago
MaddieS
• 0
0
votes
2
replies
935
views
FourCSeq - errors in plotZScores
fourcseq
updated 6.8 years ago by
Wolfgang Huber
★ 13k • written 6.8 years ago by
rustavo
• 0
0
votes
2
replies
872
views
plotZScores error in FourCSeq
fourCseq
8.0 years ago
snowhune
• 0
0
votes
11
replies
1.8k
views
FourCseq - error ountFragmentOverlaps()
fourcseq
9.2 years ago • updated 9.1 years ago
samuel collombet
▴ 140
0
votes
2
replies
876
views
FourCseq: mixed amount of replication/samples
fourcseq
7.8 years ago
Theo
▴ 10
0
votes
2
replies
1.1k
views
FourCSeq problem with getZScores
FourCSeq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
a.chesi
• 0
0
votes
1
reply
1.0k
views
FourCSeq - getZScores & getDifferences function
fourcseq
updated 8.7 years ago by
felix.klein
▴ 150 • written 8.7 years ago by
mqbsszsy
• 0
0
votes
1
reply
878
views
FourCSeq - Significant changes between condition without replicate
fourcseq
updated 8.8 years ago by
Wolfgang Huber
★ 13k • written 8.8 years ago by
julienpontis
• 0
0
votes
1
reply
1.0k
views
FourCSeq problem with getZScores and multiple viewpoints
FourCSeq
getZScores
viewpoints
software error
8.4 years ago
dzis
• 0
0
votes
3
replies
1.1k
views
FourCSeq what is inverse-vst
fourcseq
updated 8.3 years ago by
felix.klein
▴ 150 • written 8.4 years ago by
sinhashruti
• 0
2
votes
2
replies
1.0k
views
FourCSeq- paired-end library ?
fourcseq
updated 8.0 years ago by
felix.klein
▴ 150 • written 8.0 years ago by
snowhune
• 0
0
votes
2
replies
922
views
FourCSeq- without replicates
fourcseq
updated 7.9 years ago by
felix.klein
▴ 150 • written 7.9 years ago by
tlgolan
• 0
0
votes
1
reply
850
views
FourCSeq - Significant Interaction
fourcseq
updated 8.8 years ago by
Wolfgang Huber
★ 13k • written 8.8 years ago by
julienpontis
• 0
0
votes
5
replies
1.1k
views
local fit and FourCseq
local fit
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
1
vote
1
reply
892
views
FourCseq- adding information manually
fourcseq
updated 7.8 years ago by
felix.klein
▴ 150 • written 7.8 years ago by
tlgolan
• 0
0
votes
1
reply
786
views
FourCSeq - data(fc) ?
FourCSeq
updated 8.8 years ago by
Wolfgang Huber
★ 13k • written 8.8 years ago by
julienpontis
• 0
0
votes
2
replies
998
views
FourCseq, rawRanges Description
fourcseq
updated 7.7 years ago by
felix.klein
▴ 150 • written 7.7 years ago by
Theo
▴ 10
1
vote
1
reply
704
views
FourCSeq Pipeline for Capture-C Data
fourcseq
updated 5.8 years ago by
felix.klein
▴ 150 • written 5.8 years ago by
mmackiewicz
• 0
0
votes
0
replies
771
views
FourCseq and local fit
fourcseq
7.8 years ago
tlgolan
• 0
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.5 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
706
views
FourCSeq: Error in getZScores
fourcseq
getzscores
6.0 years ago
Gustavo Ruiz
• 0
0
votes
0
replies
530
views
FourCseq extraction of fragments
fourcseq
5.5 years ago
ferbecneu
• 0
32 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
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41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
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That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
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▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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