Bioconductor Gdc

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737

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TCGA GenomicDataCommons GDC

written 17 months ago by António Miguel de Jesus Domingues ▴ 510

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2.4k

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GDC TCGA tcgabiolinks

updated 2.6 years ago by cute scientist • 0 • written 6.0 years ago by Antonio Ahn ▴ 10

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1.2k

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.8 years ago jam526 • 0

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843

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TCGAbiolinks GDC TCGA

4.9 years ago modarzi ▴ 10

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1.4k

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TCGAbiolinks TCGA GDC

5.0 years ago modarzi ▴ 10

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1.5k

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TCGA MAF GDC snp mutations

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by mario.zanfardino ▴ 160

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1.3k

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genomicdatacommons tcga gdc rest http

updated 5.8 years ago by Sean Davis 21k • written 5.8 years ago by mk ▴ 20

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1.8k

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R gdc rna-seq dna methylation

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by RichardJActon ▴ 50

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3.7k

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gdc tcga wes gdc data

updated 6.6 years ago by Sean Davis 21k • written 6.6 years ago by Biologist ▴ 120

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3.3k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.6 years ago pfrancislyon • 0

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4.0k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.7 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.8 years ago by enigmargs • 0

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3.5k

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tcgabiolinks gdc

8.0 years ago jshelton • 0

12 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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