Showing : gene set enrichment • reset
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PLAGE method fails in GSVA if an overlap between gene sets and genes in expressions is less than two
gsva plage differential expression gene set enrichment
4.2 years ago krassowski.michal ▴ 20
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2
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Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 4.4 years ago by 47k • written 4.4 years ago by • 0
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2
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Visualise gene set analysis plot
gene set analysis gene set enrichment limma
updated 4.5 years ago by 47k • written 4.5 years ago by • 0
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Gene Set Enrichment based on gene presence/absence
gene set enrichment KEGG
updated 5.1 years ago by ▴ 710 • written 5.1 years ago by ▴ 10
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Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 5.2 years ago by 47k • written 5.2 years ago by • 0
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4
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No annotated genes found in universe error using goana and kegga
limma goana gene set enrichment
5.4 years ago emy_66 • 0
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2.6k
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enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE clusterprofiler annotation gene ontology gene set enrichment
updated 5.4 years ago by ★ 1.2k • written 5.4 years ago by • 0
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1000
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News: Interested in developing a new gene set enrichment tool ?
gene ontology go analysis gene set enrichment gene set analysis News
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
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1.8k
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Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 6.1 years ago by 47k • written 6.1 years ago by • 0
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2
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1.9k
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topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 6.2 years ago by ▴ 710 • written 6.5 years ago by ▴ 10
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3
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Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 6.5 years ago by ★ 1.2k • written 6.5 years ago by ▴ 10
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Comment: enrichKEGG results for non-model organism by Aciole.D • 0
If anyone still wondering about this: You can filter your 'kegg' object based on a list of target pathways. Look at these fields: `kegg@…
Comment: KEGG enrichment in R and gene IDs by Laia ▴ 10
I could finally solve this and I could get KEGG results :) Thank you so much for your help and quick replies. Best, Laia
Comment: KEGG enrichment in R and gene IDs by James W. MacDonald 62k
This part is the main issue. ``` ‘GOSemSim’ 2.22.0 is already loaded, but >= 2.23.1 is required ``` You should restart R and then re-insta…
Comment: Correct script for featurecounts in Rsubread by rmoorehe • 0
Thanks for the help. I was able to work through it using the bioconductor link. For some reason, I thought I had to create a new tab delimi…
Comment: DispEsts plot by Michael Love 39k
Are the pairs nested within batch or across?
Votes
Answer: How edgeR estimate the common dispersion?
Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
Answer: RUVr batch correction doubling number of DEGs
A: LogFC: how do you determine the cutoff for differentially expressed genes?
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