Bioconductor Gene set enrichment

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4.3k

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 7.5 years ago by Guangchuang Yu ★ 1.2k • written 7.5 years ago by kirannbishwa01 ▴ 20

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3.6k

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limma goana gene set enrichment

7.5 years ago emy_66 • 0

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3.0k

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 8.3 years ago by Lluís Revilla Sancho ▴ 760 • written 8.6 years ago by fromhj304 ▴ 10

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2.9k

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limma camera gene set analysis gene set enrichment

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by natalia.pietrosemoli • 0

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2.8k

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 8.6 years ago by Guangchuang Yu ★ 1.2k • written 8.6 years ago by fromhj304 ▴ 10

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2.2k

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limma edger barcodeplot gene set enrichment mroast

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by srmaruyama • 0

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1.9k

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camera limma gene set analysis gene set enrichment

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by emeline.perthame • 0

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1.6k

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gsva plage differential expression gene set enrichment

6.3 years ago krassowski.michal ▴ 40

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1.5k

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gene ontology go analysis gene set enrichment gene set analysis News

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by triZZla • 0

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1.4k

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gene set enrichment KEGG

updated 7.2 years ago by Lluís Revilla Sancho ▴ 760 • written 7.2 years ago by RMRG ▴ 10

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1.3k

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gene set analysis gene set enrichment limma

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by jaynishshah • 0

11 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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