Biostar Gene set enrichment

Showing : gene set enrichment • reset

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2.6k

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 5.4 years ago by Guangchuang Yu ★ 1.2k • written 5.4 years ago by kirannbishwa01 • 0

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2.5k

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limma goana gene set enrichment

5.4 years ago emy_66 • 0

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1.9k

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 6.2 years ago by Lluís Revilla Sancho ▴ 710 • written 6.5 years ago by fromhj304 ▴ 10

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1.8k

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limma camera gene set analysis gene set enrichment

updated 6.1 years ago by Gordon Smyth 47k • written 6.1 years ago by natalia.pietrosemoli • 0

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1.6k

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 6.5 years ago by Guangchuang Yu ★ 1.2k • written 6.5 years ago by fromhj304 ▴ 10

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1.4k

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limma edger barcodeplot gene set enrichment mroast

updated 5.2 years ago by Gordon Smyth 47k • written 5.2 years ago by srmaruyama • 0

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1000

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gene ontology go analysis gene set enrichment gene set analysis News

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by ivozeller • 0

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926

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camera limma gene set analysis gene set enrichment

updated 4.4 years ago by Gordon Smyth 47k • written 4.4 years ago by emeline.perthame • 0

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818

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gsva plage differential expression gene set enrichment

4.2 years ago krassowski.michal ▴ 20

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784

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gene set analysis gene set enrichment limma

updated 4.5 years ago by Gordon Smyth 47k • written 4.5 years ago by jaynishshah • 0

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720

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gene set enrichment KEGG

updated 5.1 years ago by Lluís Revilla Sancho ▴ 710 • written 5.1 years ago by RMRG ▴ 10

11 results • Page 1 of 1

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Comment: Merging samples from different sequencing runs by Zainab • 0

Thanks Michael! I've included the factors of unwanted variation to get the PCA plot on the right. Is that a suitable approach to combine re…

Comment: How to adjust plots generated using psygenet2r? by helucro ▴ 70

It's a base R plot, so you can not modify it post-generation. Running the `psygenetGene` doc example... ``` library(psygenet2r) data(qr, pa…

Comment: Multifactorial Design for DESEQ2 by ATpoint ★ 2.4k

There is a section in the vignette that covers interactions and (depending on use case) how one can do a full factorial design to make inte…

Answer: Multifactorial Design for DESEQ2 by Michael Love 39k

For questions about the experimental design, I recommend to consult with a local statistician. I have to reserve my time on the support sit…

Answer: Merging samples from different sequencing runs by Michael Love 39k

We often use RUV in the lab, and you would include the factors of unwanted variation in the design formula. See the workflow for example co…

Votes

A: Deseq2: RNA-seq and Negative binomial distribution

A: DESeq2 and shrinkage of log2 fold changes

Filtering low variance genes for WGCNA

Calculation of module membership in WGCNA

A: converting ensembl transcript ID to ensemble gene: problem & missing values

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Popular Question to Dario Strbenac ★ 1.5k