Bioconductor Gene set enrichment

Showing : gene set enrichment • reset

votes

replies

2.2k

views

limma camera gene set analysis gene set enrichment

updated 6.8 years ago by Gordon Smyth 48k • written 6.8 years ago by natalia.pietrosemoli • 0

votes

replies

2.9k

views

limma goana gene set enrichment

6.0 years ago emy_66 • 0

vote

replies

1.9k

views

rna-seq bioinformatics gene ontology gene set enrichment go

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by fromhj304 ▴ 10

votes

replies

1.7k

views

limma edger barcodeplot gene set enrichment mroast

updated 5.9 years ago by Gordon Smyth 48k • written 5.9 years ago by srmaruyama • 0

vote

replies

991

views

gene set analysis gene set enrichment limma

updated 5.2 years ago by Gordon Smyth 48k • written 5.2 years ago by jaynishshah • 0

votes

replies

1.2k

views

camera limma gene set analysis gene set enrichment

updated 5.1 years ago by Gordon Smyth 48k • written 5.1 years ago by emeline.perthame • 0

vote

replies

2.3k

views

topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 6.9 years ago by Lluís Revilla Sancho ▴ 720 • written 7.2 years ago by fromhj304 ▴ 10

votes

replies

3.1k

views

DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 6.0 years ago by Guangchuang Yu ★ 1.2k • written 6.0 years ago by kirannbishwa01 • 0

vote

955

views

gene set enrichment KEGG

updated 5.8 years ago by Lluís Revilla Sancho ▴ 720 • written 5.8 years ago by RMRG ▴ 10

vote

1.1k

views

gsva plage differential expression gene set enrichment

4.9 years ago krassowski.michal ▴ 40

votes

1.2k

views

gene ontology go analysis gene set enrichment gene set analysis News

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by triZZla • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Awards • All