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genvisr
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.1 years ago
Amy_
• 0
3
votes
10
replies
4.2k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 2.0 years ago by
zlskidmore
▴ 30 • written 3.4 years ago by
abhisikta
• 0
0
votes
1
reply
1.7k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.5 years ago by
Hervé Pagès
16k • written 3.5 years ago by
Michel
• 0
0
votes
0
replies
2.8k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.5 years ago
e
• 0
0
votes
1
reply
1.6k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.0 years ago by
zlskidmore
▴ 30 • written 5.0 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.1 years ago
sheneicechang
• 0
0
votes
0
replies
1.3k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.2 years ago
sheneicechang
• 0
0
votes
1
reply
1.6k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 7.0 years ago by
zlskidmore
▴ 30 • written 7.0 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.4 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.7k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.5 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.8k
views
GenVisR- cnSpec CNV plot
GenVisR
7.9 years ago • updated 7.8 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.6k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.8 years ago by
zlskidmore
▴ 30 • written 8.8 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.4k
views
GenVisR Installation error message
genvisR
9.8 years ago • updated 9.7 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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