Showing : genvisr • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
2.6 years ago Amy_ • 0
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error in package GenVisR while installing
GenVisR GenVis
updated 17 months ago by ▴ 30 • written 2.8 years ago by • 0
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.9 years ago by 16k • written 2.9 years ago by • 0
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
2.9 years ago e • 0
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 4.5 years ago by ▴ 30 • written 4.5 years ago by ▴ 10
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
5.5 years ago sheneicechang • 0
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.6 years ago sheneicechang • 0
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 6.4 years ago by ▴ 30 • written 6.5 years ago by • 0
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Issues with lohSpec
genvisr lohSpec
6.8 years ago dharia.priyadarshani • 0
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Copy Number plot cnSpec - how to order samples
genvisr
6.9 years ago cedric.vmdl • 0
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GenVisR- cnSpec CNV plot
GenVisR
7.3 years ago daijieqiong ▴ 10
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an error in TvTi: package GenVisR
GenVisR
updated 8.2 years ago by ▴ 30 • written 8.2 years ago by ▴ 670
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GenVisR Installation error message
genvisR
9.2 years ago • updated 9.1 years ago Deep Adhya ▴ 20
13 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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