Bioconductor Genvisr

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GenVisR GenCov

2.5 years ago Amy_ • 0

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GenVisR GenVis

updated 16 months ago by zlskidmore ▴ 30 • written 2.7 years ago by abhisikta • 0

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Install mainDropMut GenVisR

updated 2.8 years ago by Hervé Pagès 16k • written 2.8 years ago by Michel • 0

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GenVisR maftools

2.8 years ago e • 0

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variants waterfall GenVisR

updated 4.4 years ago by zlskidmore ▴ 30 • written 4.4 years ago by Jeni ▴ 10

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GenVisR ggplot2 waterfall

5.4 years ago sheneicechang • 0

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GenVisR mutation frequency R cancer bioconductor

5.5 years ago sheneicechang • 0

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GenVisr genvisr waterfall mutation

updated 6.3 years ago by zlskidmore ▴ 30 • written 6.4 years ago by ZihaoXing • 0

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genvisr lohSpec

6.7 years ago dharia.priyadarshani • 0

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genvisr

6.8 years ago cedric.vmdl • 0

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GenVisR

7.2 years ago daijieqiong ▴ 10

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GenVisR

updated 8.1 years ago by zlskidmore ▴ 30 • written 8.1 years ago by Bogdan ▴ 670

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3.1k

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genvisR

9.1 years ago Deep Adhya ▴ 20

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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