Showing : genvisr • reset
3
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10
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2.7k
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error in package GenVisR while installing
GenVisR GenVis
updated 5 months ago by ▴ 30 • written 21 months ago by • 0
0
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0
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393
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
19 months ago Amy_ • 0
0
votes
1
reply
1.1k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 23 months ago by • 0
0
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0
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1.5k
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
23 months ago e • 0
0
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1
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1.0k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 3.5 years ago by ▴ 30 • written 3.5 years ago by ▴ 10
0
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1
reply
695
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
0
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0
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905
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.4 years ago by ▴ 30 • written 5.5 years ago by • 0
0
votes
1
reply
821
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Issues with lohSpec
genvisr lohSpec
5.8 years ago dharia.priyadarshani • 0
0
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2
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1.1k
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Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago cedric.vmdl • 0
0
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4
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1.9k
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GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago daijieqiong ▴ 10
0
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2
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1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 670
2
votes
5
replies
2.7k
views
GenVisR Installation error message
genvisR
8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20
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Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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