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gff3
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.0 years ago
Raito92
▴ 60
2
votes
2
replies
1.9k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 4.6 years ago by
Michael Lawrence
★ 11k • written 4.6 years ago by
mictadlo
▴ 10
0
votes
0
replies
974
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.3 years ago
linuxborg2
• 0
2
votes
2
replies
4.4k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
6.5 years ago
Piotr Gawronski
• 0
9
votes
3
replies
3.0k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.7 years ago
Sonali Arora
▴ 390
6 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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