Showing : go • reset
0
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3
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1.5k
views
help with ReportingTools
GO GO
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 410
2
votes
5
replies
1.7k
views
obtaining a complete global alignment via pairwiseAlignment
Alignment GO Cancer BSgenome BSgenome Alignment GO Cancer BSgenome BSgenome
updated 12.4 years ago by 25k • written 12.4 years ago by ★ 13k
0
votes
8
replies
5.9k
views
Error loading GO.db
Annotation GO Annotation GO
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 30
1
vote
0
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1.7k
views
return value used for filter amongst attributes, getBM(), biomaRt
GO biomaRt GenomicRanges GO biomaRt GenomicRanges
12.4 years ago James Perkins ▴ 120
0
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0
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1.9k
views
DEXSeq, looking for a clever way for interpretation of results
Annotation GO DEXSeq Annotation GO DEXSeq
12.4 years ago Delasa Aghamirzaie ▴ 70
0
votes
1
reply
1.1k
views
edgeR - GLM for multifactors
GO edgeR GO edgeR
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 150
0
votes
0
replies
1.5k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
12.4 years ago Chris Whelan ▴ 60
0
votes
0
replies
1.2k
views
goseq and transcript length
Annotation GO PROcess goseq Annotation GO PROcess goseq
12.4 years ago Xulong Wang ▴ 10
0
votes
1
reply
1.3k
views
Bioconductor Digest, Vol 124, Issue 5
GO Clustering edgeR GO Clustering edgeR
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 870
0
votes
1
reply
2.3k
views
About the DiffBind dba.count() crash problems
GO DiffBind GO DiffBind
updated 12.4 years ago by ▴ 670 • written 12.4 years ago by ▴ 30
0
votes
2
replies
7.6k
views
Remove batch effects from RNA-seq data using edgeR and sva/ComBat
GO edgeR GO edgeR
updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 10
0
votes
1
reply
2.1k
views
goseq and transcript length data
Annotation GO PROcess goseq Annotation GO PROcess goseq
updated 12.4 years ago by ▴ 320 • written 12.4 years ago by ★ 13k
0
votes
3
replies
2.9k
views
DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 150
0
votes
2
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1.7k
views
ChIPpeakAnno makeVennDiagram problems
GO BSgenome BSgenome ChIPpeakAnno GO BSgenome BSgenome ChIPpeakAnno
updated 12.5 years ago by ★ 4.3k • written 12.5 years ago by ▴ 160
0
votes
4
replies
2.0k
views
Howto annotate blast subject.id with AnnotationDbi
Alignment GO annotate AnnotationDbi Alignment GO annotate AnnotationDbi
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 40
0
votes
2
replies
3.2k
views
DEXSeq error: Count files do not correspond to the flattened annotation file
Annotation GO DEXSeq Annotation GO DEXSeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 50
0
votes
1
reply
1.6k
views
Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 70
0
votes
1
reply
750
views
summarizeOverlaps: ambiguous method dispatch
GO GO
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 11k
0
votes
3
replies
1.8k
views
topGO desperation
GO topGO GO topGO
12.5 years ago Oertlin, Christian Stud. FHML ▴ 20
0
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0
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2.0k
views
library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
12.5 years ago Guest User ★ 13k
0
votes
1
reply
1.6k
views
gmapR problem using a GmapGenome package with gsnap()
GO BSgenome BSgenome gmapR GO BSgenome BSgenome gmapR
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ★ 3.4k
0
votes
6
replies
2.6k
views
Advice on reading big BED/BAM and ChIP-seq quality control
GO rtracklayer Rsamtools GO rtracklayer Rsamtools
updated 12.5 years ago by ▴ 350 • written 12.5 years ago by ▴ 240
0
votes
0
replies
995
views
GOseq
GO goseq GO goseq
12.5 years ago Guest User ★ 13k
0
votes
7
replies
1.4k
views
advantages of annotation packages
Annotation GO Organism Annotation GO Organism
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Reactome support for more organisms
GO GO
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 120
0
votes
6
replies
1.7k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 430
0
votes
1
reply
1.5k
views
ABarray error
Microarray Annotation GO limma beadarray Microarray Annotation GO limma beadarray
12.5 years ago Mani, Jay ▴ 20
0
votes
1
reply
1.3k
views
edgeR: Using ratios (translational efficiencies) as input
RNASeq GO Cancer limma edgeR RNASeq GO Cancer limma edgeR
updated 12.5 years ago by ▴ 210 • written 12.5 years ago by ▴ 80
0
votes
6
replies
2.0k
views
Design matrix and BCV
GO edgeR GO edgeR
updated 12.5 years ago by ▴ 110 • written 12.5 years ago by 53k
0
votes
1
reply
1.1k
views
GO evidence codes in org.Xx.egGO
GO GO
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ★ 3.0k
0
votes
0
replies
2.3k
views
Tukey\'s HSD after ANOVA
GO BRAIN GO BRAIN
12.5 years ago Guest User ★ 13k
0
votes
6
replies
1.9k
views
Analyzing "differential variability" of methylation (and gene expression)
GO GO
updated 12.5 years ago by ★ 6.5k • written 12.5 years ago by ▴ 190
0
votes
0
replies
888
views
beadarray package
Annotation GO limma Annotation GO limma
12.5 years ago Mark Dunning ★ 1.1k
0
votes
0
replies
1.4k
views
edgeR: Using ratios (translational efficiencies) as input
RNASeq GO limma edgeR RNASeq GO limma edgeR
12.5 years ago Gordon Smyth 53k
0
votes
0
replies
2.6k
views
GO term as "keytype" in GO.db
GO AnnotationDbi GO AnnotationDbi
12.5 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
3.0k
views
GO term as "keytype" in GO.db
GO AnnotationDbi GO AnnotationDbi
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 3.4k
0
votes
6
replies
2.4k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO rtracklayer CAMERA chipseq Gviz ChIPSeq GO rtracklayer CAMERA chipseq Gviz
updated 12.5 years ago by ▴ 750 • written 12.5 years ago by ★ 13k
0
votes
3
replies
2.2k
views
Design matrix and BCV
GO edgeR GO edgeR
updated 12.5 years ago by 53k • written 12.6 years ago by ▴ 110
0
votes
4
replies
1.7k
views
Lumi problem - 'Annotation columns not available'
Microarray GO illuminaMousev1 Microarray GO illuminaMousev1
updated 12.5 years ago by ▴ 440 • written 12.6 years ago by ▴ 310
0
votes
1
reply
1.3k
views
Visualization and Interpretation of Go Terms
GO ath1121501 GO ath1121501
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Limma to find differentially expressed genes
GO limma GO limma
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Differentially expressed genes from specific cell types from a single sample
Microarray GO Microarray GO
12.6 years ago Guest User ★ 13k
0
votes
2
replies
1.1k
views
How to use 'ebayes' for small samples?
GO GO
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 230
0
votes
3
replies
1.7k
views
DESeq2
GO DESeq2 GO DESeq2
updated 12.6 years ago by 43k • written 12.6 years ago by ★ 13k
1
vote
1
reply
2.2k
views
topGO Fisher test error
GO graph GO graph
updated 12.6 years ago by ▴ 400 • written 12.6 years ago by ★ 13k
0
votes
3
replies
2.1k
views
error and warning message with blocked samples with Limma
GO Cancer mouse4302 limma GO Cancer mouse4302 limma
updated 12.6 years ago by 53k • written 12.6 years ago by ★ 2.0k
0
votes
1
reply
2.4k
views
Question on unbalanced paired design
Microarray Normalization GO limma DOSE Microarray Normalization GO limma DOSE
updated 12.6 years ago by ★ 7.9k • written 12.6 years ago by ▴ 40
0
votes
3
replies
2.3k
views
trouble installing affycoretools for R 3.0
VariantAnnotation GO BSgenome affycoretools BSgenome VariantAnnotation ggbio GO BSgenome
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 2.0k
0
votes
2
replies
2.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 30
0
votes
7
replies
2.3k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
12.6 years ago Jinyan Huang ▴ 110
1,936 results • Page 9 of 39
Recent ...
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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