Showing : go • reset
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Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 4.2k
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4
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GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe Annotation Pathways GO probe
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 7.2k
0
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1
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2.4k
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using offsets from EDASeq and cqn for edgeR
GO edgeR cqn EDASeq GO edgeR cqn EDASeq
12.6 years ago Kasper Daniel Hansen ★ 6.5k
0
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3
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2.8k
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known gene => gene symbol for UCSC
GO GO
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 150
0
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2
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1.8k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
12.6 years ago Hervé Pagès 16k
0
votes
6
replies
2.1k
views
BED2RangedData
GO convert GO convert
updated 12.6 years ago by ▴ 40 • written 12.6 years ago by ★ 13k
0
votes
1
reply
2.2k
views
enrichment of GO terms based on input gene list
GO hgu95av2 GO hgu95av2
updated 12.6 years ago by ▴ 570 • written 12.6 years ago by ★ 13k
0
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1
reply
1.1k
views
(minfi) Return value from dmpFinder
GO GO
updated 12.6 years ago by ★ 4.2k • written 12.6 years ago by ▴ 10
1
vote
4
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2.0k
views
Is GO.db out of date?
Transcription GO Transcription GO
12.7 years ago • updated 12.6 years ago chawla ▴ 190
0
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0
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845
views
Error in .testGOFra� me(x, organism)
GO BiocInstaller GO BiocInstaller
12.6 years ago Guest User ★ 13k
0
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1
reply
1.2k
views
Error in .testGOFrame(x, organism)
GO Organism rat2302 AnnotationDbi GO Organism rat2302 AnnotationDbi
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ★ 13k
0
votes
10
replies
3.1k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.7 years ago Julie Zhu ★ 4.3k
0
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0
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2.5k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 380
0
votes
1
reply
1.3k
views
Negative parameter error when using goseq
GO goseq GO goseq
updated 12.7 years ago by ▴ 320 • written 12.7 years ago by ▴ 570
0
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0
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1.4k
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
12.7 years ago Kishor Tappita ▴ 340
0
votes
5
replies
1.7k
views
[Rd] enabling reproducible research & R package management & install.package.version & BiocLite
GO GO
12.7 years ago Malcolm Cook ★ 1.6k
0
votes
17
replies
9.4k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
Annotation Normalization GO PROcess oligo Annotation Normalization GO PROcess oligo
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 100
0
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2
replies
3.2k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO baySeq GO baySeq
12.7 years ago Guest User ★ 13k
0
votes
1
reply
1.2k
views
ties & strandedness in distanceToNearest GRanges
GO GO
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 60
0
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0
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2.0k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
12.7 years ago Gordon Smyth 53k
0
votes
1
reply
2.1k
views
AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 12.7 years ago by ★ 1.1k • written 12.7 years ago by ★ 13k
0
votes
0
replies
1.1k
views
GO to Enzyme Commission number conversion!
GO convert GO convert
12.7 years ago Guest User ★ 13k
0
votes
0
replies
1.2k
views
Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
12.7 years ago Hervé Pagès 16k
0
votes
6
replies
1.5k
views
Extract microarray data for genes identified by GO analysis
Microarray GO Category Microarray GO Category
updated 12.7 years ago by 68k • written 12.7 years ago by ★ 13k
0
votes
12
replies
8.2k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
12.7 years ago James W. MacDonald 68k
0
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2
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2.4k
views
using offsets from EDASeq and cqn
GO edgeR cqn EDASeq GO edgeR cqn EDASeq
12.7 years ago love ▴ 150
0
votes
0
replies
1.1k
views
easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
12.7 years ago delhomme@embl.de ★ 1.2k
0
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0
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782
views
A properly reproducible example of bizarre VariantAnnotation behavior
GO GO
12.7 years ago Tim Triche ★ 4.2k
0
votes
3
replies
1.1k
views
curious behavior from VariantAnnotation 1.5.36
GO BSgenome BSgenome GO BSgenome BSgenome
12.7 years ago Tim Triche ★ 4.2k
0
votes
3
replies
1.4k
views
DiffBind - Scores for peakset are all the same
GO BSgenome BSgenome GO BSgenome BSgenome
updated 12.7 years ago by ★ 5.2k • written 12.8 years ago by ▴ 510
0
votes
0
replies
1.6k
views
Question concerning Diffbind
Normalization GO edgeR DiffBind Normalization GO edgeR DiffBind
12.8 years ago Rory Stark ★ 5.2k
0
votes
1
reply
963
views
Creating annotation database for GOstat
Annotation GO Annotation GO
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 6.0k
0
votes
0
replies
1.6k
views
how to supply a vector/list of results to GenTable in topGO?
GO PROcess topGO GO PROcess topGO
12.8 years ago Adrian Alexa ▴ 400
0
votes
0
replies
1.1k
views
rhdf5 and factors
GO GLAD GO GLAD
12.8 years ago Stephen Eglen ▴ 10
0
votes
0
replies
992
views
Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GO IRanges GO IRanges
12.8 years ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 80
0
votes
2
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1.3k
views
DEXSeq and parallel, orphan processes.
GO DEXSeq GO DEXSeq
updated 12.8 years ago by ★ 1.9k • written 12.8 years ago by ▴ 30
0
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0
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1.6k
views
Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
12.8 years ago Guest User ★ 13k
0
votes
0
replies
604
views
AgiMicroRna problem
GO GO
12.8 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
question about "evidence code" in data.frame from GOstats packages with unsupported model organisms (Marc Carlson)
GO Organism GOstats GO Organism GOstats
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 100
1
vote
0
replies
1.2k
views
GO graphs made with topGO are unreadable
GO graph topGO GO graph topGO
12.8 years ago Guest User ★ 13k
0
votes
2
replies
1.7k
views
Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
updated 12.8 years ago by ▴ 60 • written 12.8 years ago by ★ 13k
0
votes
7
replies
3.5k
views
paper - download - pubmed
GO GO
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 300
0
votes
3
replies
2.2k
views
Gene Ontology: Shortest path from root to node
GO GO
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ★ 13k
0
votes
2
replies
3.2k
views
biomaRt does not load archived Ensembl Genes database anymore.
GO biomaRt Vega GO biomaRt Vega
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ▴ 20
0
votes
0
replies
939
views
Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
12.8 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.2k
views
About Rstudio via Amazon web services.
GO KEGGprofile GO KEGGprofile
12.9 years ago Dan Tenenbaum ★ 8.2k
0
votes
10
replies
2.6k
views
Kegg Profile package problem
GO KEGGprofile GO KEGGprofile
12.9 years ago gregory voisin ▴ 430
0
votes
3
replies
2.4k
views
Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation GO ArrayTools Annotation GO ArrayTools
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 110
1,936 results • Page 10 of 39
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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