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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 2.7 years ago by ▴ 760 • written 2.7 years ago by ▴ 10
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
3
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3
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1.2k
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 7.0 years ago by ▴ 760 • written 7.0 years ago by ▴ 10
0
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1.8k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 8.6 years ago by ▴ 760 • written 10.1 years ago by ▴ 10
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2
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2.4k
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 8.6 years ago by • 0 • written 13.5 years ago by ★ 13k
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
13.1 years ago Pablo Andretta Jaskowiak ▴ 10
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1.0k
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Problem while working with GOSim package
GOSim GOSim
13.2 years ago ANIRBAN BHAR ▴ 60
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2
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1.7k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.2 years ago Olivier Lucas ▴ 40
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3
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1.5k
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Query Gene Ontology
GOSim GOSim
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 10
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1
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1.5k
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 20
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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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