Showing : gosim • reset
1
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 22 months ago by ▴ 760 • written 23 months ago by ▴ 10
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1
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891
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
3
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3
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1.0k
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 6.2 years ago by ▴ 760 • written 6.2 years ago by ▴ 10
0
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1
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1.6k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.8 years ago by ▴ 760 • written 9.2 years ago by ▴ 10
0
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2
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2.2k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.8 years ago by • 0 • written 12.6 years ago by ★ 13k
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0
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1.1k
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
12.2 years ago Pablo Andretta Jaskowiak ▴ 10
0
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0
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930
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Problem while working with GOSim package
GOSim GOSim
12.3 years ago ANIRBAN BHAR ▴ 60
0
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2
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1.5k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 13.3 years ago by ▴ 40 • written 13.3 years ago by ★ 7.2k
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0
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1.3k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
13.3 years ago Olivier Lucas ▴ 40
0
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3
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1.3k
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Query Gene Ontology
GOSim GOSim
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 10
0
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1
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1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 20
11 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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