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GOTHiC BubbleTree PANR

8 months ago Abu 0

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2.3k

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diffhic gothic hicup hic-c hic

updated 6.9 years ago by Aaron Lun ★ 29k • written 6.9 years ago by mictadlo ▴ 10

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1.3k

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hic diffhic gothic hicup hic-c

6.9 years ago mictadlo ▴ 10

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1.4k

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GOTHiC

7.0 years ago alongalor ▴ 10

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1.0k

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gothic

9.4 years ago manduchi ▴ 10

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2.0k

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GOTHiC hic

10.1 years ago Nathan Sheffield ▴ 10

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3.5k

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HiTC gothic diffhic HiC

10.2 years ago • updated 10.1 years ago Bogdan ▴ 670

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4.1k

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bioconductor gothic R

updated 10.4 years ago by Vicky_Tche • 0 • written 10.4 years ago by sv380 • 0

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1.4k

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GOTHiC software error

10.5 years ago bef22 • 0

9 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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