Showing : gothic • reset
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from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 10
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Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
6.0 years ago mictadlo ▴ 10
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3
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1.2k
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GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
6.2 years ago alongalor ▴ 10
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0
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921
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GOTHiC odd output
gothic
8.5 years ago manduchi ▴ 10
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3
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1.8k
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GOTHiC hg19 error
GOTHiC hic
9.3 years ago • updated 9.2 years ago Nathan Sheffield ▴ 10
4
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20
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2.8k
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scaling loess curves
HiTC gothic diffhic HiC
9.3 years ago Bogdan ▴ 670
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3.9k
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Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor gothic R
updated 9.5 years ago by • 0 • written 9.6 years ago by • 0
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0
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1.3k
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GOTHiC seqlevel bug
GOTHiC software error
9.6 years ago bef22 • 0
8 results • Page 1 of 1
Recent ...
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k
Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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