Showing : graph • reset
0
votes
10
replies
2.0k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 16.8 years ago by ▴ 130 • written 16.8 years ago by ★ 5.5k
0
votes
11
replies
1.7k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 260
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
0
votes
4
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1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
0
votes
14
replies
2.7k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 17.9 years ago by ▴ 510 • written 18.0 years ago by ▴ 300
0
votes
4
replies
1.3k
views
Compilation problem installing Bioconductor (RGraphviz)
graph Rgraphviz graph Rgraphviz
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 80
0
votes
4
replies
1.3k
views
problem getting setNodeColorRule from RCytoscape to work
graph graph
12.1 years ago Tony ▴ 30
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.2k
views
Recent changes to Bioconductor packages
reposTools graph widgetTools limma reposTools graph widgetTools limma
20.6 years ago • updated 20.5 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago • updated 21.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
2.6k
views
hexbin in R 2.2.0 - installation problem
graph hexbin graph hexbin
updated 18.6 years ago by ▴ 320 • written 18.6 years ago by ★ 6.0k
0
votes
5
replies
1.1k
views
how to store multiple relationships between nodes in graphNEL?
graph graph
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ★ 1.1k
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
votes
4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
votes
3
replies
928
views
A question about the construction of a node-link graph based on incident matrix
graph graph
updated 19.0 years ago by ★ 13k • written 19.0 years ago by ▴ 40
0
votes
3
replies
1.4k
views
Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
20.2 years ago • updated 20.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.3 years ago • updated 20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
1.1k
views
ftM2graphNEL unexpected error
graph graph
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 50
0
votes
3
replies
969
views
removeEdge: strange error
graph graph
17.6 years ago Dan Bebber ▴ 50
0
votes
3
replies
1.1k
views
Recent changes to Bioconductor packages
genefilter affy graph Rgraphviz limma annaffy genefilter affy graph Rgraphviz limma
20.7 years ago • updated 20.6 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
1.3k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 890
0
votes
5
replies
1.3k
views
Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
0
votes
4
replies
1.8k
views
KEGGgraph
Pathways Organism graph PROcess KEGGgraph Pathways Organism graph PROcess KEGGgraph
11.5 years ago Ricardo Silva ▴ 110
0
votes
7
replies
1.5k
views
Pairs plots in lumi, plots look different?
Microarray graph Microarray graph
updated 16.0 years ago by ★ 1.2k • written 16.0 years ago by ▴ 20
0
votes
2
replies
1.2k
views
heatmap and cluster with marray
graph graph
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 340
0
votes
3
replies
937
views
How to plot the graph object
graph Rgraphviz graph Rgraphviz
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 40
0
votes
2
replies
1.0k
views
slow graph methods
SystemsBiology graph SystemsBiology graph
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by 25k
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
7
replies
1.4k
views
slow insertions in to graphNEL object (24 hours for 16k nodes)
graph graph
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 1.1k
0
votes
2
replies
1.1k
views
fontsize in Rgraphviz
GO graph Rgraphviz GO graph Rgraphviz
updated 16.3 years ago by ▴ 540 • written 16.3 years ago by ▴ 830
0
votes
4
replies
3.7k
views
R graphs: all paths lengths between two nodes in a directed graph
graph graph
updated 9.3 years ago by • 0 • written 15.0 years ago by ▴ 20
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
3
replies
1.1k
views
Questions for Affy package on hist() and boxplot()
affy graph affy graph
19.3 years ago Luo, Wen ▴ 50
0
votes
2
replies
1.2k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
4
replies
1.2k
views
Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
20.3 years ago Elisabetta Manduchi ▴ 160
0
votes
2
replies
1.1k
views
R CMD check and RUnit
graph graph
17.8 years ago Gorjanc Gregor ▴ 140
0
votes
2
replies
1.7k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.5 years ago by ▴ 680 • written 19.5 years ago by ▴ 10
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
0
votes
3
replies
1.2k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
0
votes
2
replies
2.2k
views
Rgraphviz - how to use node positions from one graph as node positions in another?
graph graph
updated 16.8 years ago by ▴ 510 • written 16.8 years ago by ▴ 50
0
votes
3
replies
1.3k
views
R and ARB
graph graph
updated 20.7 years ago by ▴ 20 • written 20.7 years ago by ▴ 430
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
5
replies
1.3k
views
Package "graph": bug in function addEdge
graph graph
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 20
0
votes
5
replies
1.7k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 90
0
votes
2
replies
1.2k
views
mva.pairs parameters
graph graph
19.4 years ago Beth Wilmot ▴ 120
0
votes
5
replies
1.7k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 450
0
votes
2
replies
1.0k
views
Fwd: Rgraphviz installation problem - redefinition - conflicting types
Cancer graph Rgraphviz Cancer graph Rgraphviz
updated 18.1 years ago by ★ 7.4k • written 18.2 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
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Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
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For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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Answer: fgsea significant result
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