Bioconductor Hdf5

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hdf5 h5 rhdf5

updated 2.4 years ago by Mike Smith ★ 6.6k • written 2.4 years ago by dNand • 0

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software error tximport hdf5

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by me5537 ▴ 10

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rhdf5 hdf5

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by channsoden • 0

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rhdf5 hdf5

updated 6.8 years ago by Mike Smith ★ 6.6k • written 6.8 years ago by felicien.meunier ▴ 40

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rhdf5 hdf5

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.6 years ago by Kipper Fletez-Brant ▴ 150

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deseq2 hdf5 rangedsummarizedexperiment rnaseq

7.4 years ago Jakob Petereit • 0

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rhdf5 r hdf5

updated 19 months ago by Yijing • 0 • written 7.5 years ago by him4u324 ▴ 10

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hdf5 DelayedArray summarizedexperiment Tutorial

7.8 years ago Vincent J. Carey, Jr. 6.7k

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biom json hdf5 qiime phyloseq

updated 8.1 years ago by Bernd Fischer ▴ 550 • written 8.1 years ago by newmanss • 0

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rhdf5 hdf5 dependencies

updated 8.4 years ago by Mike Smith ★ 6.6k • written 8.4 years ago by thabermann • 0

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hdf5 rhdf5 hdf

updated 8.7 years ago by Bernd Fischer ▴ 550 • written 8.7 years ago by manfredodiporcia • 0

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rhdf5 hdf5

9.1 years ago trombe.piju • 0

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installation dependency library hdf5

9.2 years ago Ulrik Stervbo ▴ 30

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rhdf5 hdf5

updated 9.4 years ago by Nathaniel Hayden ▴ 180 • written 9.4 years ago by serefarikan • 0

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rhdf5 hdf5

updated 9.4 years ago by Bernd Fischer ▴ 550 • written 9.4 years ago by Mike Smith ★ 6.6k

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rhdf5 hdf5

updated 10.0 years ago by Bernd Fischer ▴ 550 • written 10.0 years ago by Nathaniel Hayden ▴ 180

16 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k