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hg19
•
reset
2
votes
4
replies
1.3k
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BiomaRT inconsistency for PDGFRA, returns FIP1L1 instead
biomart
hg19
7.6 years ago
Stephane Plaisance | VIB |
▴ 60
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
2
votes
3
replies
1.7k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb
hg19
ucsc
seqlevel
genomicfeatures
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
foehn
▴ 100
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
BSgenome.Hsapiens.UCSC.hg19 Sequence missing
bsgenome
hg19
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
Lakshmanan Iyer
▴ 250
0
votes
1
reply
945
views
Identifying long stretches of Ns in hg19
bsgenome.hsapiens.ucsc.hg19
hg19
updated 6.5 years ago by
Mike Smith
★ 6.5k • written 6.5 years ago by
addyS
• 0
0
votes
0
replies
1.3k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.0 years ago
matthew.bashton
• 0
7 results • Page
1 of 1
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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tangming2005
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