Showing : hgu95av2 • reset
0
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13
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2.2k
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Hypergeometric test with Disease Ontology
GO hgu95av2 GO hgu95av2
updated 13.3 years ago by ▴ 300 • written 13.3 years ago by ▴ 60
0
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8
replies
1.7k
views
Annotation packages
Annotation GO hgu95av2 affy limma Annotation GO hgu95av2 affy limma
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 350
0
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7
replies
1.4k
views
Rkeys function from AnnotationDbi returns all Rkeys for a subset
hgu95av2 hgu95av2
updated 15.4 years ago by 65k • written 15.4 years ago by ▴ 110
0
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7
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1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
0
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6
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1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 190
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6
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1.3k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 430
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5
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2.5k
views
failing to filter ExpressionSet object using nsFilter
hgu95av2 hgu95av2
updated 9.9 years ago by 25k • written 9.9 years ago by ★ 13k
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5
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2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
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4
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2.4k
views
HGU95a and HGU95av2 with gcrma
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
updated 19.5 years ago by ★ 13k • written 19.5 years ago by ▴ 80
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4
replies
1.1k
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
21.0 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
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votes
3
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860
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
0
votes
3
replies
1.2k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 17.1 years ago by ▴ 870 • written 17.1 years ago by 65k
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3
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831
views
GO with mu11ksuba(b)
GO hgu95av2 mu11ksuba cdf GO hgu95av2 mu11ksuba cdf
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 300
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3
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2.4k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
15.8 years ago anna freni sterrantino ▴ 120
2
votes
3
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1.2k
views
Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 10.6 years ago by 65k • written 10.6 years ago by ★ 13k
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2
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1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
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2
replies
1.6k
views
GEOquery and GEO issues
hgu95a hgu95av2 GEOquery hgu95a hgu95av2 GEOquery
18.3 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
2
replies
1.2k
views
GeneR fail to compile
hgu95av2 GeneR hgu95av2 GeneR
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 120
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2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.8 years ago Jenny Drnevich ★ 2.2k
0
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2
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998
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 70
0
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2
replies
4.9k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 15.1 years ago by ★ 13k • written 15.1 years ago by ▴ 300
0
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2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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2
replies
956
views
hyperGTest
GO hgu133a hgu133plus2 hgu95av2 GO hgu133a hgu133plus2 hgu95av2
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ★ 1.2k
0
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2
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3.2k
views
getGmt error
GO hgu95a hgu95av2 GO hgu95a hgu95av2
updated 10.7 years ago by 25k • written 10.7 years ago by ★ 13k
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2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 80
0
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1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
votes
1
reply
1.3k
views
hyperGTest Error in sqliteExecStatement...
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 60
0
votes
1
reply
703
views
ReadAffy problem sampleNames + hgu95av2
hgu95av2 Biobase affy hgu95av2 Biobase affy
20.0 years ago Adaikalavan Ramasamy ★ 1.8k
0
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1
reply
623
views
hgu95av2
hgu95av2 hgu95av2
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
1
reply
1.0k
views
Error with library hgu95av2
hgu95av2 hgu95av2
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 40
0
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1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 100
0
votes
1
reply
659
views
Category package problems with Vignette documentation
Microarray hgu95av2 Category Microarray hgu95av2 Category
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 20
0
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1
reply
899
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
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1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
1
reply
951
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation Clustering hgu95av2 Annotation Clustering hgu95av2
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 60
0
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1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 130
0
votes
1
reply
862
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 15.6 years ago by ▴ 360 • written 15.6 years ago by 25k
0
votes
1
reply
833
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
1
reply
930
views
browseGenome width question (rtracklayer)
GO hgu95av2 GO hgu95av2
updated 15.5 years ago by ▴ 620 • written 15.5 years ago by ★ 1.1k
0
votes
1
reply
1.2k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 180
0
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1
reply
1.1k
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 14.3 years ago by ▴ 610 • written 14.3 years ago by ★ 2.0k
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1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.3 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
0
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1
reply
1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 70
0
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1
reply
1.1k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 14.1 years ago by ▴ 610 • written 14.1 years ago by ▴ 190
0
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1
reply
1.3k
views
GSEABase and Broad Inst Sets
Annotation hgu133plus2 hgu95av2 GSEABase Annotation hgu133plus2 hgu95av2 GSEABase
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 930
0
votes
1
reply
910
views
Use of createSimpleBimap
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
updated 13.2 years ago by ★ 4.2k • written 13.2 years ago by ★ 1.1k
0
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1
reply
1.3k
views
creating a UniprotIdentifier within GSEABase
Annotation Cancer hgu95av2 convert GSEABase Annotation Cancer hgu95av2 convert GSEABase
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 910
50 results • Page 1 of 1
Recent ...
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Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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