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hgu95av2
•
reset
0
votes
0
replies
840
views
AnnonationDbi inteface with RApache
hgu95av2
AnnotationDbi
hgu95av2
AnnotationDbi
17.5 years ago
Francesco Favero
▴ 30
0
votes
1
reply
1.5k
views
hyperGTest Error in sqliteExecStatement...
GO
hgu95av2
GOstats
GO
hgu95av2
GOstats
updated 17.6 years ago by
rgentleman
★ 5.5k • written 17.6 years ago by
Christopher Brown
▴ 10
0
votes
0
replies
984
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray
Annotation
Cancer
hgu95av2
Biobase
annotate
affy
Microarray
Annotation
Cancer
17.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.2k
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation
Clustering
hgu95av2
Annotation
Clustering
hgu95av2
updated 17.8 years ago by
James W. MacDonald
68k • written 17.8 years ago by
Sean MacEachern
▴ 60
0
votes
0
replies
635
views
error in qc AffyQCReport package
hgu95av2
hgu95av2
18.1 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
1.6k
views
Bioconductor 2.1 is released
SNP
Microarray
SAGE
Annotation
Bayesian
Regression
GUI
CGH
hgu95av2
graph
Rgraphviz
SNP
18.1 years ago
Hervé Pagès
16k
0
votes
7
replies
2.3k
views
problem with GOstats, developmental version?
GO
Survival
hgu95av2
annotate
affy
affydata
graph
Rgraphviz
limma
gcrma
matchprobes
GO
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Jenny Drnevich
★ 2.2k
0
votes
2
replies
1.5k
views
AnnBuilder questions
Annotation
GO
Yeast
hgu95av2
probe
geneplotter
AnnBuilder
Annotation
GO
Yeast
hgu95av2
updated 18.3 years ago by
Marc Carlson
★ 7.2k • written 18.3 years ago by
melany black
▴ 30
0
votes
6
replies
1.9k
views
mas5 update.default problem
hgu95av2
cdf
affy
affyio
hgu95av2
cdf
affy
affyio
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
David Ruau
▴ 190
0
votes
0
replies
829
views
(no subject)
hgu95av2
cdf
affy
affyio
hgu95av2
cdf
affy
affyio
18.5 years ago
David Ruau
▴ 190
0
votes
3
replies
1.7k
views
Annotation of U95av2 array
Microarray
Genetics
Annotation
GO
Cancer
hgu95av2
probe
affy
AnnBuilder
PROcess
Genetics
updated 18.6 years ago by
Nianhua Li
▴ 870 • written 18.6 years ago by
James W. MacDonald
68k
0
votes
2
replies
1.3k
views
GOstats and library ath1121501
ath1121501
hgu95av2
GOstats
ath1121501
hgu95av2
GOstats
updated 19.2 years ago by
Seth Falcon
★ 7.4k • written 19.2 years ago by
Martin Olivier
▴ 70
0
votes
2
replies
1.8k
views
problem loading affycoretools
Survival
hgu95av2
Biobase
Ruuid
annotate
genefilter
multtest
affydata
graph
limma
gcrma
19.3 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.4k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
19.5 years ago
Pedro López Romero
▴ 360
0
votes
0
replies
729
views
Where does BioC metadata come from?
Annotation
hgu95av2
affy
Annotation
hgu95av2
affy
19.5 years ago
Suraj Menon
▴ 50
0
votes
0
replies
791
views
problems with GO package data
GO
Cancer
hgu95av2
probe
Biobase
annotate
genefilter
multtest
graph
GOstats
GO
Cancer
19.8 years ago
Yu-An Dong
▴ 40
0
votes
2
replies
2.1k
views
GEOquery and GEO issues
hgu95a
hgu95av2
GEOquery
hgu95a
hgu95av2
GEOquery
19.8 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
1
reply
1.2k
views
rbind in annaffy problem
GO
hgu95av2
rat2302
cdf
annotate
affy
graph
annaffy
RBGL
GOstats
biomaRt
GO
hgu95av2
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
Kimpel, Mark W
▴ 890
0
votes
2
replies
1.4k
views
problem with annaffy aafFunction function
GO
hgu95av2
rat2302
Biobase
annotate
reposTools
affy
annaffy
GO
hgu95av2
rat2302
affy
updated 20.1 years ago by
James W. MacDonald
68k • written 20.1 years ago by
Kimpel, Mark W
▴ 890
0
votes
0
replies
1.4k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation
GO
Cancer
hgu95av2
hu6800
probe
annotate
affy
graph
RBGL
GOstats
Annotation
20.1 years ago
Shi, Tao
▴ 720
0
votes
6
replies
2.0k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO
Survival
hgu95av2
mgu74av2
Ruuid
annotate
multtest
affy
graph
annaffy
RBGL
GOstats
updated 20.4 years ago by
Seth Falcon
★ 7.4k • written 20.4 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
900
views
Category package problems with Vignette documentation
Microarray
hgu95av2
Category
Microarray
hgu95av2
Category
updated 20.5 years ago by
rgentleman
★ 5.5k • written 20.5 years ago by
Neefs, Jean-Marc [PRDBE]
▴ 20
0
votes
1
reply
1.4k
views
simLL method in GOstats to measure distances between yeast genes
Yeast
hgu95av2
ygs98
Yeast
hgu95av2
ygs98
updated 20.5 years ago by
rgentleman
★ 5.5k • written 20.5 years ago by
Maria Persico
▴ 100
0
votes
3
replies
1.2k
views
GO with mu11ksuba(b)
GO
hgu95av2
mu11ksuba
cdf
GO
hgu95av2
mu11ksuba
cdf
updated 20.6 years ago by
Seth Falcon
★ 7.4k • written 20.6 years ago by
Mayte Suarez-Farinas
▴ 300
0
votes
1
reply
1.2k
views
Error with library hgu95av2
hgu95av2
hgu95av2
updated 20.8 years ago by
Seth Falcon
★ 7.4k • written 20.8 years ago by
Claudia Döring
▴ 40
0
votes
1
reply
819
views
hgu95av2
hgu95av2
hgu95av2
updated 20.9 years ago by
Wolfgang Huber
★ 13k • written 20.9 years ago by
Lana Schaffer
★ 1.3k
0
votes
0
replies
1.1k
views
Re: HGU95a and HGU95av2 with gcrma and combineAffybatch
hgu95a
hgu95av2
cdf
gcrma
hgu95a
hgu95av2
cdf
gcrma
20.9 years ago
Vincent Detours
▴ 80
0
votes
0
replies
964
views
Problem with aafSymbol
hgu95av2
moe430a
annaffy
hgu95av2
moe430a
annaffy
20.9 years ago
Jeff Lande
▴ 110
0
votes
4
replies
2.7k
views
HGU95a and HGU95av2 with gcrma
hgu95a
hgu95av2
cdf
gcrma
hgu95a
hgu95av2
cdf
gcrma
updated 21.0 years ago by
Wolfgang Huber
★ 13k • written 21.0 years ago by
Vincent Detours
▴ 80
0
votes
1
reply
2.0k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE
GO
Kidney
hgu95av2
hu6800
rae230a
cdf
Biobase
Ruuid
DynDoc
annotate
edd
multtest
updated 21.1 years ago by
rgentleman
★ 5.5k • written 21.1 years ago by
rkakkar@uchicago.edu
▴ 100
0
votes
0
replies
1.1k
views
HGU95A and HGU95ACDF
Annotation
Cancer
hgu95a
hgu95av2
cdf
Annotation
Cancer
hgu95a
hgu95av2
cdf
21.2 years ago
John Zhang
★ 2.9k
0
votes
3
replies
1.1k
views
Problems using GO 1.6.0 in Windows
GO
hgu133a
hgu95av2
GO
hgu133a
hgu95av2
updated 21.5 years ago by
John Zhang
★ 2.9k • written 21.5 years ago by
Oosting, J. PATH
▴ 550
0
votes
0
replies
985
views
Re: MetaData 1.6.0
Annotation
GO
Organism
hgu95av2
mguatlas5k
mgug4121a
rgug4130a
probe
Category
Annotation
21.5 years ago
John Zhang
★ 2.9k
0
votes
1
reply
892
views
ReadAffy problem sampleNames + hgu95av2
hgu95av2
Biobase
affy
hgu95av2
Biobase
affy
21.5 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
1
reply
1.3k
views
Querying PubMed Database
hgu95av2
rae230a
annotate
affy
affydata
hgu95av2
rae230a
annotate
affy
affydata
updated 22.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.2 years ago by
Christina Kendziorski
▴ 60
0
votes
0
replies
956
views
example of working from a database dump
hgu95av2
Biobase
affy
limma
hgu95av2
Biobase
affy
limma
22.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
4
replies
1.5k
views
Recent changes to Bioconductor packages
Normalization
hgu95a
hgu95av2
annotate
reposTools
limma
Normalization
hgu95a
hgu95av2
22.6 years ago • updated 22.5 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
0
replies
966
views
vignette feedback - HowTo: Automated Querying of PubMed Data
Cancer
hgu95a
hgu95av2
Cancer
hgu95a
hgu95av2
22.6 years ago
John Zhang
★ 2.9k
0
votes
0
replies
826
views
vignette feedback - HowTo: Automated Querying of PubMed Data
hgu95a
hgu95av2
hgu95a
hgu95av2
22.6 years ago
Lynn Young
▴ 30
89 results • Page
2 of 2
Recent ...
Replies
Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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