Showing : hgu95av2 • reset
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AnnonationDbi inteface with RApache
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
17.7 years ago Francesco Favero ▴ 30
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hyperGTest Error in sqliteExecStatement...
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 17.7 years ago by ★ 5.5k • written 17.7 years ago by ▴ 10
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ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
17.9 years ago Martin Morgan 25k
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ExpressionSet class and problems with phenotype and metadata matrices
Annotation Clustering hgu95av2 Annotation Clustering hgu95av2
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 60
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error in qc AffyQCReport package
hgu95av2 hgu95av2
18.2 years ago Mayte Suarez-Farinas ▴ 510
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.3 years ago Hervé Pagès 16k
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problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.2k
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AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 18.4 years ago by ★ 7.2k • written 18.4 years ago by ▴ 30
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6
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mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 190
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(no subject)
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
18.7 years ago David Ruau ▴ 190
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Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.8 years ago by ▴ 870 • written 18.8 years ago by 68k
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GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 70
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problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
19.5 years ago • updated 19.4 years ago Jenny Drnevich ★ 2.2k
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.6 years ago Pedro López Romero ▴ 360
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Where does BioC metadata come from?
Annotation hgu95av2 affy Annotation hgu95av2 affy
19.7 years ago Suraj Menon ▴ 50
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problems with GO package data
GO Cancer hgu95av2 probe Biobase annotate genefilter multtest graph GOstats GO Cancer
20.0 years ago Yu-An Dong ▴ 40
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GEOquery and GEO issues
hgu95a hgu95av2 GEOquery hgu95a hgu95av2 GEOquery
20.0 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 890
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problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 20.2 years ago by 68k • written 20.2 years ago by ▴ 890
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UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
20.3 years ago Shi, Tao ▴ 720
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Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ★ 1.4k
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Category package problems with Vignette documentation
Microarray hgu95av2 Category Microarray hgu95av2 Category
updated 20.6 years ago by ★ 5.5k • written 20.6 years ago by ▴ 20
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simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 20.7 years ago by ★ 5.5k • written 20.7 years ago by ▴ 100
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GO with mu11ksuba(b)
GO hgu95av2 mu11ksuba cdf GO hgu95av2 mu11ksuba cdf
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 300
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Error with library hgu95av2
hgu95av2 hgu95av2
updated 20.9 years ago by ★ 7.4k • written 20.9 years ago by ▴ 40
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hgu95av2
hgu95av2 hgu95av2
updated 21.0 years ago by ★ 13k • written 21.0 years ago by ★ 1.3k
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Re: HGU95a and HGU95av2 with gcrma and combineAffybatch
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
21.1 years ago Vincent Detours ▴ 80
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Problem with aafSymbol
hgu95av2 moe430a annaffy hgu95av2 moe430a annaffy
21.1 years ago Jeff Lande ▴ 110
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HGU95a and HGU95av2 with gcrma
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
updated 21.2 years ago by ★ 13k • written 21.2 years ago by ▴ 80
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Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 100
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HGU95A and HGU95ACDF
Annotation Cancer hgu95a hgu95av2 cdf Annotation Cancer hgu95a hgu95av2 cdf
21.4 years ago John Zhang ★ 2.9k
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Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 21.6 years ago by ★ 2.9k • written 21.6 years ago by ▴ 550
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Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
21.7 years ago John Zhang ★ 2.9k
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ReadAffy problem sampleNames + hgu95av2
hgu95av2 Biobase affy hgu95av2 Biobase affy
21.7 years ago Adaikalavan Ramasamy ★ 1.8k
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Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 22.3 years ago by 6.7k • written 22.3 years ago by ▴ 60
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example of working from a database dump
hgu95av2 Biobase affy limma hgu95av2 Biobase affy limma
22.3 years ago Vincent J. Carey, Jr. 6.7k
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Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
22.7 years ago • updated 22.6 years ago madman@jimmy.harvard.edu ▴ 850
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vignette feedback - HowTo: Automated Querying of PubMed Data
Cancer hgu95a hgu95av2 Cancer hgu95a hgu95av2
22.7 years ago John Zhang ★ 2.9k
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vignette feedback - HowTo: Automated Querying of PubMed Data
hgu95a hgu95av2 hgu95a hgu95av2
22.7 years ago Lynn Young ▴ 30
89 results • Page 2 of 2
Recent ...
Replies
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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