Bioconductor Hitc

Showing : hitc • reset

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HiTC importC sparseMatrix

3.5 years ago shikha • 0

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1.5k

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HiTC HiC-Pro

5.8 years ago sergio.espeso-gil • 0

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HiTC

updated 4.4 years ago by ahmed.abbaselmahdi • 0 • written 6.4 years ago by Konstantin Okonechnikov ▴ 40

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Hi-C HiTC

7.4 years ago ta_awwad ▴ 10

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HiTC

7.5 years ago cath ▴ 30

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HiTC IRanges windows debian

updated 7.7 years ago by Nicolas Servant ▴ 260 • written 7.7 years ago by René Wiegandt • 0

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HiTC

updated 8.6 years ago by Nicolas Servant ▴ 260 • written 8.6 years ago by enrique.vidal ▴ 10

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hi-c HiTC fourcseq

10.1 years ago • updated 10.0 years ago Nicolas Servant ▴ 260

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1.5k

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hic-c hitc fourcseq

10.1 years ago Nicolas Servant ▴ 260

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3.5k

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HiTC gothic diffhic HiC

10.2 years ago Bogdan ▴ 670

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1.1k

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HiTC

10.3 years ago Bogdan ▴ 670

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1.3k

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importing HiTC

10.6 years ago gugpuccio ▴ 10

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3.0k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by Wim Kreinen ▴ 100

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Annotation HiTC Annotation HiTC

updated 12.8 years ago by Valerie Obenchain ★ 6.8k • written 12.8 years ago by Hermann Norpois ▴ 170

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HiTC HiTC

updated 12.8 years ago by Martin Morgan 25k • written 12.8 years ago by Hermann Norpois ▴ 170

15 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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