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hitc
•
reset
0
votes
3
replies
1.3k
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
3.3 years ago
shikha
• 0
0
votes
6
replies
1.4k
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
5.6 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
2.0k
views
A/B compartments computation: control settings
HiTC
updated 4.2 years ago by
ahmed.abbaselmahdi
• 0 • written 6.2 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
2.2k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
7.2 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.6k
views
Gene Density computation in pca.hic
HiTC
7.3 years ago
cath
▴ 30
0
votes
5
replies
2.1k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 7.5 years ago by
Nicolas Servant
▴ 260 • written 7.5 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.8k
views
normLGF yields non-symetric matrices
HiTC
updated 8.4 years ago by
Nicolas Servant
▴ 260 • written 8.4 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.8k
views
FourC object from scratch
hi-c
HiTC
fourcseq
9.9 years ago • updated 9.8 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.5k
views
FourC object from scratch
hic-c
hitc
fourcseq
9.9 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
3.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.0 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
normalization method for 5C
HiTC
10.0 years ago
Bogdan
▴ 670
0
votes
0
replies
1.3k
views
Problem importing 5C data
importing
HiTC
10.4 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.9k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 12.5 years ago by
Dan Tenenbaum
★ 8.2k • written 12.5 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.7k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 12.6 years ago by
Valerie Obenchain
★ 6.8k • written 12.6 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.5k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: Heatmap of the Count Matrix
by
ArnulfoByrd
• 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics
by
James W. MacDonald
68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
by
James W. MacDonald
68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
by
Michael Love
43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Votes
Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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