Bioconductor Hitc

Showing : hitc • reset

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1.4k

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HiTC importC sparseMatrix

3.4 years ago shikha • 0

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1.5k

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HiTC HiC-Pro

5.7 years ago sergio.espeso-gil • 0

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2.1k

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HiTC

updated 4.3 years ago by ahmed.abbaselmahdi • 0 • written 6.3 years ago by Konstantin Okonechnikov ▴ 40

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2.3k

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Hi-C HiTC

7.3 years ago ta_awwad ▴ 10

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1.6k

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HiTC

7.4 years ago cath ▴ 30

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2.2k

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HiTC IRanges windows debian

updated 7.7 years ago by Nicolas Servant ▴ 260 • written 7.7 years ago by René Wiegandt • 0

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1.9k

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HiTC

updated 8.6 years ago by Nicolas Servant ▴ 260 • written 8.6 years ago by enrique.vidal ▴ 10

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2.9k

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hi-c HiTC fourcseq

10.1 years ago • updated 9.9 years ago Nicolas Servant ▴ 260

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1.5k

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hic-c hitc fourcseq

10.1 years ago Nicolas Servant ▴ 260

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3.5k

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HiTC gothic diffhic HiC

10.2 years ago • updated 10.1 years ago Bogdan ▴ 670

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1.1k

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HiTC

10.2 years ago Bogdan ▴ 670

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1.3k

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importing HiTC

10.6 years ago gugpuccio ▴ 10

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3.0k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.6 years ago by Dan Tenenbaum ★ 8.2k • written 12.6 years ago by Wim Kreinen ▴ 100

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1.7k

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Annotation HiTC Annotation HiTC

updated 12.7 years ago by Valerie Obenchain ★ 6.8k • written 12.7 years ago by Hermann Norpois ▴ 170

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1.5k

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HiTC HiTC

updated 12.7 years ago by Martin Morgan 25k • written 12.7 years ago by Hermann Norpois ▴ 170

15 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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