Bioconductor Hitc

Showing : hitc • reset

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1.4k

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HiTC importC sparseMatrix

3.6 years ago shikha • 0

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1.6k

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HiTC HiC-Pro

5.9 years ago sergio.espeso-gil • 0

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2.2k

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HiTC

updated 4.5 years ago by ahmed.abbaselmahdi • 0 • written 6.5 years ago by Konstantin Okonechnikov ▴ 40

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2.4k

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Hi-C HiTC

7.5 years ago ta_awwad ▴ 10

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1.7k

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HiTC

7.6 years ago cath ▴ 30

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2.2k

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HiTC IRanges windows debian

updated 7.9 years ago by Nicolas Servant ▴ 260 • written 7.9 years ago by René Wiegandt • 0

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2.0k

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HiTC

updated 8.8 years ago by Nicolas Servant ▴ 260 • written 8.8 years ago by enrique.vidal ▴ 10

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3.0k

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hi-c HiTC fourcseq

10.3 years ago • updated 10.1 years ago Nicolas Servant ▴ 260

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1.6k

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hic-c hitc fourcseq

10.3 years ago Nicolas Servant ▴ 260

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3.6k

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HiTC gothic diffhic HiC

10.4 years ago Bogdan ▴ 670

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1.2k

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HiTC

10.4 years ago Bogdan ▴ 670

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1.4k

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importing HiTC

10.8 years ago gugpuccio ▴ 10

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3.0k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.9 years ago by Dan Tenenbaum ★ 8.2k • written 12.9 years ago by Wim Kreinen ▴ 100

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1.8k

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Annotation HiTC Annotation HiTC

updated 13.0 years ago by Valerie Obenchain ★ 6.8k • written 13.0 years ago by Hermann Norpois ▴ 170

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1.6k

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HiTC HiTC

updated 13.0 years ago by Martin Morgan 25k • written 13.0 years ago by Hermann Norpois ▴ 170

15 results • Page 1 of 1

Recent ...

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760