Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

2.6 years ago Sarah • 0

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1.5k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

2.8 years ago Jojo • 0

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1.2k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 6.7 years ago by Mike Smith ★ 6.6k • written 6.7 years ago by makoouji • 0

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1.5k

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 6.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 6.9 years ago by Giovanni Calice ▴ 160

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1.9k

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limma illuminaio idat gzip

updated 7.5 years ago by Matthew Ritchie ▴ 1000 • written 7.5 years ago by Guido Hooiveld ★ 4.1k

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3.2k

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illuminaio normalization

updated 7.5 years ago by Matthew Ritchie ▴ 1000 • written 9.3 years ago by Stephen Piccolo ▴ 600

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1.2k

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illuminaio limma

8.0 years ago • updated 4.1 years ago h.mon • 0

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1.8k

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minfi illuminaio epic

8.4 years ago m.van_iterson ▴ 20

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2.3k

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limma lumi illuminaio illimina 450k methylation microarray

8.6 years ago Adam • 0

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2.5k

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illuminaio idat beadarray

updated 9.2 years ago by Mike Smith ★ 6.6k • written 9.2 years ago by willj ▴ 30

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2.8k

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limma illuminaio illumina human WG6v2

updated 9.4 years ago by Matthew Ritchie ▴ 1000 • written 9.4 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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2.4k

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illuminaio idat

9.8 years ago • updated 9.7 years ago lacion • 0

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2.4k

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SNP illuminaio SNP illuminaio

updated 10.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 10.9 years ago by Mike Smith ★ 6.6k

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2.0k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.0 years ago Kasper Daniel Hansen ★ 6.5k

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6.2k

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beadarray lumi illuminaio idat

updated 3.0 years ago by Gordon Smyth 51k • written 11.0 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Answer: Allele frequencies for ALL alleles of one SNP ? by Abiologist • 0

I've discovered that rsnps::ncbi_snp_query(snp_id) does actually give this information - at the bottom of the result$maf_population table. …

Answer: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

Hi, if you want to do some formal inference about the effect of a drug at RNA level, then I would recommend you doing a differential expres…

Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w by Robert Castelo ★ 3.4k

The `phastCons100way.UCSC.hg38` annotation package, storing conservation scores of the human genome version `hg38`, should be queried with …

Comment: Package needs internet access by firestar ▴ 20

That worked! Thanks! I created the genome file locally and uploaded that. I didn't really think that BSgenome.Hsapiens.UCSC.hg38 was only u…

Comment: limma technical repeat correction by john • 0

Hi @gordonsmyth, Thank you very much for your response. The normalization process involves multiple steps and they provide a normalised f…

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Answer: Package needs internet access

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

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