Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

2.9 years ago Sarah • 0

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

3.1 years ago Jojo • 0

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1.3k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 7.0 years ago by Mike Smith ★ 6.6k • written 7.0 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 7.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.2 years ago by Giovanni Calice ▴ 160

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limma illuminaio idat gzip

updated 7.8 years ago by Matthew Ritchie ▴ 1000 • written 7.8 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 7.9 years ago by Matthew Ritchie ▴ 1000 • written 9.6 years ago by Stephen Piccolo ▴ 600

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illuminaio limma

8.3 years ago • updated 4.4 years ago h.mon • 0

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minfi illuminaio epic

8.7 years ago m.van_iterson ▴ 20

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limma lumi illuminaio illimina 450k methylation microarray

9.0 years ago Adam • 0

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illuminaio idat beadarray

updated 9.5 years ago by Mike Smith ★ 6.6k • written 9.5 years ago by willj ▴ 30

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limma illuminaio illumina human WG6v2

updated 9.7 years ago by Matthew Ritchie ▴ 1000 • written 9.7 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

10.1 years ago lacion • 0

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SNP illuminaio SNP illuminaio

updated 11.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 11.3 years ago by Mike Smith ★ 6.6k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.3 years ago Kasper Daniel Hansen ★ 6.5k

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6.8k

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beadarray lumi illuminaio idat

updated 3.3 years ago by Gordon Smyth 52k • written 11.3 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k