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illuminaio
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Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
3.5 years ago • updated 3.4 years ago
Sarah
• 0
2
votes
4
replies
1.9k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
3.6 years ago
Jojo
• 0
0
votes
2
replies
1.4k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 7.5 years ago by
Mike Smith
★ 6.6k • written 7.5 years ago by
makoouji
• 0
0
votes
2
replies
1.7k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 7.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.7 years ago by
Giovanni Calice
▴ 160
0
votes
1
reply
2.1k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 8.4 years ago by
Matthew Ritchie
▴ 1000 • written 8.4 years ago by
Guido Hooiveld
★ 4.1k
1
vote
5
replies
3.4k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 8.4 years ago by
Matthew Ritchie
▴ 1000 • written 10.2 years ago by
Stephen Piccolo
▴ 600
1
vote
2
replies
1.4k
views
read.idat and empty Symbols
illuminaio
limma
8.8 years ago • updated 4.9 years ago
h.mon
• 0
1
vote
2
replies
2.1k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
9.2 years ago
m.van_iterson
▴ 20
1
vote
2
replies
2.5k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
9.5 years ago
Adam
• 0
4
votes
10
replies
3.0k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 10.0 years ago by
Mike Smith
★ 6.6k • written 10.1 years ago by
willj
▴ 30
1
vote
4
replies
3.1k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 10.3 years ago by
Matthew Ritchie
▴ 1000 • written 10.3 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
0
votes
10
replies
2.8k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
10.6 years ago
lacion
• 0
0
votes
1
reply
2.5k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 11.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.8 years ago by
Mike Smith
★ 6.6k
0
votes
0
replies
2.2k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
11.8 years ago
Kasper Daniel Hansen
★ 6.5k
3
votes
9
replies
7.2k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 3.8 years ago by
Gordon Smyth
53k • written 11.8 years ago by
Sean Davis
21k
15 results • Page
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Answer: DiffBind - question on the use of filtered or unfiltered input data
by
vejogos850
• 0
DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
by
Peter Hickey
▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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