Bioconductor Illuminaio

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IlluminaHumanMethylation450BeadChip illuminaio normalize450K

2.7 years ago Sarah • 0

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1.5k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

2.9 years ago Jojo • 0

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1.2k

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illuminaio illumina human ht-12 v4 gene expression micorarray

updated 6.8 years ago by Mike Smith ★ 6.6k • written 6.8 years ago by makoouji • 0

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 6.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 6.9 years ago by Giovanni Calice ▴ 160

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1.9k

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limma illuminaio idat gzip

updated 7.6 years ago by Matthew Ritchie ▴ 1000 • written 7.6 years ago by Guido Hooiveld ★ 4.1k

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illuminaio normalization

updated 7.6 years ago by Matthew Ritchie ▴ 1000 • written 9.4 years ago by Stephen Piccolo ▴ 600

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1.2k

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illuminaio limma

8.0 years ago • updated 4.2 years ago h.mon • 0

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1.8k

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minfi illuminaio epic

8.5 years ago m.van_iterson ▴ 20

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2.3k

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limma lumi illuminaio illimina 450k methylation microarray

8.7 years ago Adam • 0

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2.5k

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illuminaio idat beadarray

updated 9.3 years ago by Mike Smith ★ 6.6k • written 9.3 years ago by willj ▴ 30

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2.8k

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limma illuminaio illumina human WG6v2

updated 9.5 years ago by Matthew Ritchie ▴ 1000 • written 9.5 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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illuminaio idat

9.8 years ago lacion • 0

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2.4k

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SNP illuminaio SNP illuminaio

updated 11.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 11.0 years ago by Mike Smith ★ 6.6k

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2.0k

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Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi

11.1 years ago Kasper Daniel Hansen ★ 6.5k

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6.3k

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beadarray lumi illuminaio idat

updated 3.0 years ago by Gordon Smyth 52k • written 11.1 years ago by Sean Davis 21k

15 results • Page 1 of 1

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Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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