Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
illuminaio
•
reset
5
votes
5
replies
2.2k
views
Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
2.0 years ago
Sarah
• 0
4
votes
10
replies
2.1k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.6 years ago by
Mike Smith
★ 6.5k • written 8.6 years ago by
willj
▴ 30
3
votes
9
replies
5.6k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Sean Davis
21k
2
votes
4
replies
1.2k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.2 years ago
Jojo
• 0
1
vote
2
replies
1.1k
views
read.idat and empty Symbols
illuminaio
limma
7.4 years ago • updated 3.5 years ago
h.mon
• 0
1
vote
5
replies
2.9k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.7 years ago by
Stephen Piccolo
▴ 590
1
vote
4
replies
2.5k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 8.8 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
1
vote
2
replies
2.0k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
8.1 years ago
Adam
• 0
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.8 years ago
m.van_iterson
▴ 20
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
10.4 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
2.3k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 10.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.4 years ago by
Mike Smith
★ 6.5k
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 6.9 years ago by
Matthew Ritchie
▴ 1000 • written 6.9 years ago by
Guido Hooiveld
★ 3.9k
0
votes
2
replies
1.3k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 6.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 6.3 years ago by
Giovanni Calice
▴ 160
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
makoouji
• 0
0
votes
10
replies
2.1k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
9.2 years ago
lacion
• 0
15 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
France,
2 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
Australia,
23 minutes ago
Melbourne, Australia,
56 minutes ago
INDIA,
1 hour ago
Traffic: 672 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6