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illuminaio
•
reset
0
votes
10
replies
2.2k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
9.2 years ago
lacion
• 0
1
vote
4
replies
2.6k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
4
votes
10
replies
2.2k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.7 years ago by
Mike Smith
★ 6.5k • written 8.7 years ago by
willj
▴ 30
1
vote
5
replies
2.9k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Stephen Piccolo
▴ 590
3
votes
9
replies
5.7k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.4 years ago by
Gordon Smyth
50k • written 10.5 years ago by
Sean Davis
21k
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.9 years ago
m.van_iterson
▴ 20
5
votes
5
replies
2.3k
views
Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
2.1 years ago • updated 2.0 years ago
Sarah
• 0
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
makoouji
• 0
0
votes
1
reply
2.3k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 10.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.4 years ago by
Mike Smith
★ 6.5k
1
vote
2
replies
1.1k
views
read.idat and empty Symbols
illuminaio
limma
7.4 years ago • updated 3.5 years ago
h.mon
• 0
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 7.0 years ago by
Guido Hooiveld
★ 3.9k
0
votes
2
replies
1.3k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 6.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 6.3 years ago by
Giovanni Calice
▴ 160
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
10.4 years ago
Kasper Daniel Hansen
★ 6.5k
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.3 years ago
Jojo
• 0
1
vote
2
replies
2.0k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
8.1 years ago
Adam
• 0
15 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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