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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.1 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.1k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Adam_M
• 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.3 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.6k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
1.9k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
8.7 years ago
svlachavas
▴ 830
1
vote
2
replies
2.3k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
8.8 years ago
alakatos
▴ 130
6
votes
4
replies
4.0k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
svlachavas
▴ 830
0
votes
0
replies
946
views
problem with insilicoMerging
insilicomerging
8.9 years ago
carol white
▴ 680
1
vote
5
replies
1.9k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.0 years ago by
Matthew McCall
▴ 830 • written 9.0 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.1k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
9.5 years ago
Li Liu
▴ 100
0
votes
1
reply
1.3k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.0 years ago by
Quentin De Clerck
▴ 10 • written 10.0 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.4k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 10.7 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
Li Liu
▴ 100
0
votes
2
replies
1.6k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.9 years ago
Ed Siefker
▴ 230
13 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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