Bioconductor Isoforms

Showing : isoforms • reset

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isoforms DESeq2

3.5 years ago arfranco ▴ 130

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RATs RNA-Seq Isoforms DTU expression

updated 6.2 years ago by fruce_ki ▴ 20 • written 6.2 years ago by UserAnonyme • 0

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

7.3 years ago rbenel ▴ 50

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dexseq differential isoform usage isoforms summarizeoverlaps granges

7.4 years ago A ▴ 60

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1.8k

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cummerbund heatmap isoforms transcript_id

8.4 years ago domenico.somma • 0

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4.3k

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dexseq bitseq cuffdiff Differential exon usage isoforms

10.3 years ago • updated 10.2 years ago elle ▴ 10

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edgeR ruvseq rnaseq isoforms

10.3 years ago sergio.espeso-gil • 0

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1.7k

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DEXSeq transcripts isoforms

updated 10.3 years ago by Alejandro Reyes ★ 1.9k • written 10.3 years ago by peter_venhuizen • 0

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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