Showing : isoforms • reset
2
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2
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1.2k
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Confounding DE results with DESeq2
isoforms DESeq2
3.5 years ago arfranco ▴ 130
1
vote
9
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3.0k
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Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs RNA-Seq Isoforms DTU expression
updated 6.2 years ago by ▴ 20 • written 6.2 years ago by • 0
0
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3
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2.0k
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Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR
7.4 years ago rbenel ▴ 50
0
votes
0
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1.3k
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Metadata sheet for DEXSeq analysis
dexseq differential isoform usage isoforms summarizeoverlaps granges
7.5 years ago A ▴ 60
0
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0
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1.8k
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cummeRbund heatmap for specific isoforms (not genes)
cummerbund heatmap isoforms transcript_id
8.5 years ago domenico.somma • 0
5
votes
18
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4.3k
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Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq bitseq cuffdiff Differential exon usage isoforms
10.3 years ago • updated 10.2 years ago elle ▴ 10
5
votes
3
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3.0k
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edgeR: annotation and isoform analysis alternatives
edgeR ruvseq rnaseq isoforms
10.4 years ago • updated 10.3 years ago sergio.espeso-gil • 0
1
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2
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1.7k
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DEXSeq transcripts per condition
DEXSeq transcripts isoforms
updated 10.4 years ago by ★ 1.9k • written 10.4 years ago by • 0
8 results • Page 1 of 1
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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