Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
isoforms
•
reset
2
votes
2
replies
1.2k
views
Confounding DE results with DESeq2
isoforms
DESeq2
3.5 years ago
arfranco
▴ 130
1
vote
9
replies
3.0k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 6.2 years ago by
fruce_ki
▴ 20 • written 6.2 years ago by
UserAnonyme
• 0
0
votes
3
replies
2.0k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
7.4 years ago
rbenel
▴ 50
0
votes
0
replies
1.3k
views
Metadata sheet for DEXSeq analysis
dexseq
differential isoform usage
isoforms
summarizeoverlaps
granges
7.5 years ago
A
▴ 60
0
votes
0
replies
1.8k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund
heatmap
isoforms
transcript_id
8.5 years ago
domenico.somma
• 0
5
votes
18
replies
4.3k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
10.3 years ago • updated 10.2 years ago
elle
▴ 10
5
votes
3
replies
3.0k
views
edgeR: annotation and isoform analysis alternatives
edgeR
ruvseq
rnaseq
isoforms
10.4 years ago • updated 10.3 years ago
sergio.espeso-gil
• 0
1
vote
2
replies
1.7k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 10.4 years ago by
Alejandro Reyes
★ 1.9k • written 10.4 years ago by
peter_venhuizen
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards
• All
Popular Question
to
Stephen Piccolo
▴ 600
Popular Question
to
JKim
• 0
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Guangchuang Yu
★ 1.2k
Popular Question
to
Paulito
• 0
Locations
• All
WEHI, Melbourne, Australia,
33 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
The city by the bay,
2 hours ago
Spain,
4 hours ago
Barcelona, Spain,
7 hours ago
Traffic: 1643 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6