Bioconductor Isoforms

Showing : isoforms • reset

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isoforms DESeq2

3.6 years ago arfranco ▴ 130

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RATs RNA-Seq Isoforms DTU expression

updated 6.3 years ago by fruce_ki ▴ 20 • written 6.3 years ago by UserAnonyme • 0

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

7.5 years ago rbenel ▴ 50

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dexseq differential isoform usage isoforms summarizeoverlaps granges

7.6 years ago A ▴ 60

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cummerbund heatmap isoforms transcript_id

8.6 years ago domenico.somma • 0

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dexseq bitseq cuffdiff Differential exon usage isoforms

10.4 years ago elle ▴ 10

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3.0k

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edgeR ruvseq rnaseq isoforms

10.5 years ago • updated 10.4 years ago sergio.espeso-gil • 0

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DEXSeq transcripts isoforms

updated 10.5 years ago by Alejandro Reyes ★ 1.9k • written 10.5 years ago by peter_venhuizen • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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