Showing : isoforms • reset
2
votes
2
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1.3k
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Confounding DE results with DESeq2
isoforms DESeq2
3.8 years ago arfranco ▴ 130
1
vote
9
replies
3.3k
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Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs RNA-Seq Isoforms DTU expression
updated 6.5 years ago by ▴ 20 • written 6.5 years ago by • 0
0
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3
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2.2k
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Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR
7.7 years ago rbenel ▴ 50
0
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0
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1.4k
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Metadata sheet for DEXSeq analysis
dexseq differential isoform usage isoforms summarizeoverlaps granges
7.8 years ago A ▴ 60
0
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0
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1.9k
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cummeRbund heatmap for specific isoforms (not genes)
cummerbund heatmap isoforms transcript_id
8.8 years ago domenico.somma • 0
5
votes
18
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4.7k
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Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq bitseq cuffdiff Differential exon usage isoforms
10.6 years ago elle ▴ 10
5
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3
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3.1k
views
edgeR: annotation and isoform analysis alternatives
edgeR ruvseq rnaseq isoforms
10.7 years ago • updated 10.6 years ago sergio.espeso-gil • 0
1
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2
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1.8k
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DEXSeq transcripts per condition
DEXSeq transcripts isoforms
updated 10.7 years ago by ★ 1.9k • written 10.7 years ago by • 0
8 results • Page 1 of 1
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Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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