Showing : keggsoap • reset
1
vote
5
replies
2.0k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 660
1
vote
16
replies
2.1k
views
error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.4 years ago by 25k • written 11.4 years ago by ▴ 420
0
votes
0
replies
1.0k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.4 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
657
views
mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.4 years ago Yi-Xiong Sean Zhou ▴ 50
0
votes
1
reply
1.2k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 10
0
votes
0
replies
943
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.7 years ago Kimpel, Mark W ▴ 890
0
votes
12
replies
2.1k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 30
0
votes
0
replies
692
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.2 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.1k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.5 years ago by ▴ 870 • written 17.5 years ago by ▴ 40
0
votes
7
replies
1.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.5 years ago by ▴ 870 • written 17.5 years ago by ★ 6.0k
0
votes
0
replies
926
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
17.5 years ago ALAN SMITH ▴ 40
0
votes
0
replies
800
views
KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
17.5 years ago Nianhua Li ▴ 870
0
votes
3
replies
936
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.3 years ago by ★ 1.7k • written 17.3 years ago by ▴ 40
0
votes
1
reply
1.0k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.8 years ago by ★ 2.9k • written 16.8 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.1 years ago by ▴ 140 • written 15.1 years ago by ▴ 120
0
votes
0
replies
943
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.1 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
798
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ★ 1.9k
0
votes
3
replies
1.4k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 270
0
votes
2
replies
1.4k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 140
0
votes
4
replies
1.2k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.1 years ago by 6.7k • written 15.1 years ago by ▴ 350
0
votes
0
replies
788
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.1 years ago Daniel Brewer ★ 1.9k
0
votes
3
replies
1.3k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.1 years ago by ▴ 400 • written 15.1 years ago by ▴ 30
0
votes
0
replies
954
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
14.9 years ago Paolo Sonego ▴ 140
0
votes
0
replies
973
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
14.8 years ago Glazko, Galina ▴ 350
0
votes
2
replies
1.0k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ★ 1.9k
0
votes
1
reply
1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ▴ 70
0
votes
2
replies
3.4k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 340
0
votes
0
replies
823
views
SSOAP functions
KEGGSOAP KEGGSOAP
13.0 years ago Michael Gormley ▴ 60
0
votes
2
replies
1.0k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.5 years ago by ★ 8.2k • written 12.6 years ago by ▴ 140
0
votes
1
reply
849
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ★ 13k
0
votes
1
reply
1.1k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 70
0
votes
1
reply
806
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 110
0
votes
2
replies
1.4k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 230
0
votes
0
replies
971
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.3 years ago January Weiner ▴ 240
0
votes
0
replies
972
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.3 years ago Voke AO ▴ 760
0
votes
5
replies
1.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 110
0
votes
1
reply
1.3k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.2 years ago by ▴ 830 • written 12.2 years ago by ▴ 20
0
votes
2
replies
1.0k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 30
0
votes
1
reply
840
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.4 years ago by ★ 8.2k • written 11.4 years ago by ▴ 120
0
votes
0
replies
1.1k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.4 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
1.3k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.5 years ago by 21k • written 19.5 years ago by ▴ 60
0
votes
1
reply
843
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.0 years ago doctor.dee005 • 0
0
votes
2
replies
872
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.4 years ago michael watson IAH-C ★ 3.4k
43 results • Page 1 of 1
Recent ...
Replies
Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
Awards • All
Popular Question to shepherl 3.9k
Popular Question to Guido Hooiveld ★ 4.0k
Popular Question to Chris ▴ 10
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Robert Castelo ★ 3.3k
Locations • All
WEHI, Melbourne, Australia, just now
Taiwan, 4 minutes ago
Switzerland, 8 minutes ago
France, 20 minutes ago
Melbourne, Australia, 49 minutes ago
Traffic: 570 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6