Showing : keggsoap • reset
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KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
5.9 years ago doctor.dee005 • 0
1
vote
5
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2.0k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 660
1
vote
16
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2.0k
views
error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 420
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0
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1.1k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.3 years ago Dan Tenenbaum ★ 8.2k
0
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1
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829
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.3 years ago by ★ 8.2k • written 11.3 years ago by ▴ 120
0
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2
replies
1.0k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ▴ 30
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5
replies
1.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.1 years ago by ▴ 20 • written 12.2 years ago by ▴ 110
0
votes
1
reply
1.2k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.2 years ago by ▴ 830 • written 12.2 years ago by ▴ 20
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0
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940
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.2 years ago Voke AO ▴ 760
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0
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958
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.2 years ago January Weiner ▴ 240
0
votes
2
replies
1.4k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 230
0
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1
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793
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 110
0
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1
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1.1k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 70
0
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1
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837
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 13k
0
votes
2
replies
1.0k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.4 years ago by ★ 8.2k • written 12.5 years ago by ▴ 140
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0
replies
811
views
SSOAP functions
KEGGSOAP KEGGSOAP
13.0 years ago Michael Gormley ▴ 60
0
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2
replies
3.3k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 340
0
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1
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1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 70
0
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2
replies
988
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 1.9k
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0
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961
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
14.7 years ago Glazko, Galina ▴ 350
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0
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942
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
14.8 years ago Paolo Sonego ▴ 140
0
votes
3
replies
1.3k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.0 years ago by ▴ 400 • written 15.0 years ago by ▴ 30
0
votes
0
replies
772
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.0 years ago Daniel Brewer ★ 1.9k
0
votes
4
replies
1.2k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 350
0
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2
replies
1.4k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 140
0
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3
replies
1.3k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 270
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votes
3
replies
1.2k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.0 years ago by ▴ 140 • written 15.0 years ago by ▴ 120
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0
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897
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.0 years ago michael watson IAH-C ★ 3.4k
0
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1
reply
783
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ★ 1.9k
0
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1
reply
1.0k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.7 years ago by ★ 2.9k • written 16.7 years ago by ▴ 30
0
votes
3
replies
922
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.2 years ago by ★ 1.7k • written 17.2 years ago by ▴ 40
0
votes
7
replies
1.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.4 years ago by ▴ 870 • written 17.4 years ago by ★ 6.0k
0
votes
0
replies
788
views
KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
17.4 years ago Nianhua Li ▴ 870
0
votes
0
replies
915
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
17.4 years ago ALAN SMITH ▴ 40
0
votes
2
replies
1.1k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.4 years ago by ▴ 870 • written 17.5 years ago by ▴ 40
0
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0
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680
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.1 years ago michael watson IAH-C ★ 3.4k
0
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12
replies
2.1k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ▴ 30
0
votes
0
replies
907
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.6 years ago Kimpel, Mark W ▴ 890
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1
reply
1.2k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
0
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0
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642
views
mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.3 years ago Yi-Xiong Sean Zhou ▴ 50
0
votes
0
replies
1.0k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.3 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
853
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.3 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.2k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 60
43 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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