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lfc
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6
votes
4
replies
2.7k
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Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
6.8 years ago
rkp
• 0
0
votes
7
replies
1.4k
views
LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 5.2 years ago by
sally.badawi
• 0
4
votes
14
replies
17k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 7.1 years ago by
rraadd_8
• 0 • written 7.1 years ago by
tootiki
• 0
17
votes
7
replies
13k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 6.7 years ago by
Michael Love
41k • written 6.7 years ago by
Anke Busch
▴ 10
1
vote
1
reply
772
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 22 months ago by
Michael Love
41k • written 22 months ago by
stew
• 0
0
votes
6
replies
1.5k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 18 months ago by
Michael Love
41k • written 5.4 years ago by
Mariaxi
• 0
0
votes
1
reply
1.1k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
2.9 years ago
ayy2110
• 0
2
votes
1
reply
2.2k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
brionyk9
• 0
8 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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